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29 Open 82 Closed
29 Open 82 Closed
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Issues list

Error when running on rMATS generated BAM files
#139 opened Nov 6, 2024 by nicholas-moskwa
5
Got a similar issue that was reported before (Issues # 72, and 115). I am not sure how to fix it after saving the -e SE JC file as tab delimited text
#138 opened Oct 31, 2024 by nbizzozero
8
Clarification on Exon Inclusion Representation in Visualizations
#137 opened Oct 29, 2024 by COOL005
3
Rmats image
#135 opened Sep 9, 2024 by alquamalok22
1
error? IndexError: index 90838 is out of bounds for axis 0 with size 90771
#134 opened Sep 4, 2024 by divinehui
10
Potential bugs in the rmats2sashimiplot visualization
#133 opened Aug 16, 2024 by mumdark
4
rMATS-long and rmats2sashimiplot
#131 opened May 18, 2024 by suiyue7
1
Error checking bam files
#130 opened May 8, 2024 by RaghdaKailany
1
Analyzing pair analysis data
#129 opened May 7, 2024 by tanya-lasagne
3
AttributeError: 'pysam.calignmentfile.AlignedSegment' object has no attribute 'reference_name'
#128 opened Apr 21, 2024 by kerendanan1511
1
2to3.sh not working
#127 opened Apr 19, 2024 by AleixPalahi
1
Filter average 0 junction read on the plot
#125 opened Mar 26, 2024 by Qingru44004
1
sashimi group
#124 opened Mar 25, 2024 by Qingru44004
3
Separate label for each sample in --b1
#122 opened Feb 22, 2024 by dmgie
Help to understand group sashimi plot
#120 opened Jan 29, 2024 by Sahu-Mousumi
1
Help with rmats2sashimiplot
#119 opened Jan 10, 2024 by Sahu-Mousumi
1
Is there a problem providing sorted bam files to rMATS?
#118 opened Jan 10, 2024 by Sahu-Mousumi
1
UserWarning: set_ticklabels() should only be used with a fixed number of ticks
#117 opened Jan 8, 2024 by Qingru44004
1
'nan' in sashimiplot PDF file
#116 opened Dec 5, 2023 by bioPG
4
ValueError: 'chr' is not in list
#115 opened Nov 24, 2023 by Portulaca666
1
Test example data: No entries found for gene chr16:9000:25001:+ in GFF
#114 opened Nov 9, 2023 by yangchuhua
1
IOError: truncated file
#113 opened Nov 9, 2023 by deb0612
3
Why is the line between two exons not shown when the inclusive isoform count is 0?
#112 opened Nov 8, 2023 by bioPG
6
About RPKM duplicate
#111 opened Nov 8, 2023 by ESWRKJ
1
First/Last sample in each grouping always return nan
#110 opened Oct 30, 2023 by EspressoKris
4
ProTip! Updated in the last three days: updated:>2024-11-22.