Filter average 0 junction read on the plot

[Qingru44004]

Hi,

As discussed in another issue, sometimes the junction read may round to 0 if its average is less than 1. Now, I want to add a filter of the events, like for every JC shown in the plot, at least XX% of the samples should have XX reads. How should I get those raw records to get rid of the 0 in the plot? Meanwhile, do you have a suggestion for the cutoff on my filteration?

[EricKutschera]

You could try modifying the rmats2sashimiplot code. This post has links to the lines of code for calculating and ploting the junction counts: #112 (comment)

rMATS v4.3.0 includes --individual-counts which outputs counts for each junction. You could filter based on those columns