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27 Open 9 Closed
27 Open 9 Closed
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Issues list

[BulkRNASeq] VV_DESEQ2_ANALYSIS error with all integer sample names
#112 opened Aug 20, 2024 by torres-alexis
[BulkRNASeq] Issues with numeric sample names
#111 opened Aug 19, 2024 by cyouh95
[Microarray] Add option to skip DE step during processing
#104 opened Jul 15, 2024 by cyouh95
[Microarray] Factor group column renaming issue when one factor is substring of another
#100 opened Jul 2, 2024 by cyouh95
[Microarray] Assertion fails in GENERATE_SOFTWARE_TABLE when data files are not compressed
#99 opened Jun 12, 2024 by cyouh95
1
[Microarray Affymetrix] Processed data protocol
#98 opened Jun 7, 2024 by cyouh95
1
[Microarray] Unintentional renaming of columns causes issues later in selection of columns
#97 opened Jun 6, 2024 by cyouh95
[Microarray] Issue combining dataframes using bind_rows() when getBM() returns no results
#96 opened May 30, 2024 by cyouh95
[Microarray Agilent 1-channel] Generate processed data protocol
#85 opened May 17, 2024 by cyouh95
[BulkRNASeq] Generate CSV of parsed metrics
#84 opened May 15, 2024 by cyouh95
[BulkRNASeq] Combine MultiQC reports
#83 opened May 15, 2024 by cyouh95
[Metagenomics Illumina] Some datasets have too many files in the MAGs and bins folders
#76 opened Apr 5, 2024 by bnovak32
[Metagenomics Illumina] explicitly setting humann3 reference db locations in rule
#62 opened Feb 29, 2024 by AstrobioMike
ENSEMBL annotations not populating correctly
#43 opened Oct 9, 2023 by carnold-sjsu
4
[BulkRNASeq] Add V&V Check: Assert adaptor content removed using Trimmed Reads FastQC MultiQC
#42 opened Sep 15, 2023 by J-81
[BulkRNASeq] Remove generation of visualization extended DGE table
#41 opened Sep 2, 2023 by J-81
[BulkRNASeq] Update default publish output directory when processing GLDS data
#40 opened Sep 2, 2023 by J-81
[BulkRNASeq] Handle cases where distinct group names resolve to the same R safe name
#39 opened Sep 2, 2023 by J-81
[BulkRNASeq] Handle processing with experimental groups where N = 1
#38 opened Sep 2, 2023 by J-81
Add reference table support for "Pseudomonas Aeruginosa"
#37 opened Sep 2, 2023 by J-81
1 task
[BulkRNASeq] Underspecification of memory for STAR_ALIGN
#36 opened Aug 8, 2023 by J-81
[BulkRNASeq] Workflow fails to launch using approach 3 when gldsAccession is not supplied
#35 opened Jul 28, 2023 by J-81
[BulkRNASeq] V&V program mistypes samplenames as ints when possible
#33 opened Jun 28, 2023 by J-81
[BulkRNASeq] Handling Technical Replicates
#32 opened Jun 10, 2023 by J-81
2
Add reference table support for "Euglena gracilis"
#26 opened May 2, 2023 by J-81
ProTip! What’s not been updated in a month: updated:<2024-12-02.