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an issue can arise if the user is pointing to previously installed humann3 reference databases, or if the locations were manually changed for testing at some point
this linked commit on the metagenomics branch integrated always explicitly setting the locations based on what is in the config.yaml: 1405949
changes are in the humann3_PE and humann3_SE rules
in case it's helpful, i'm also attaching a modified Snakefile that has the changes in it (as a zip due to file-type restrictions) Snakefile.zip
The text was updated successfully, but these errors were encountered:
humann3_PE
andhumann3_SE
rulesSnakefile.zip
The text was updated successfully, but these errors were encountered: