release-3.0

What's Changed

• v3.0 - DSL2 and new report by @glormph in #34
• Release 3.0 WIP by @glormph in #35
• Tool updates: msstitch 3.16, proteowizard 3.024172

Release 2.18

• Increase heap size for dinosaur to handle bigger files
• Make percolator accept unknown non-UNIMOD modifications
• Fix issue where set/sample group names were not correctly matched if they overlap

Release 2.17

• Percolator forces concatenated T/D search instead of mix-max
• Made using mixed isobaric types possible
• Test runs included (not verified yet)
• Add peptide-is-in external fasta columns
• Base container and R libraries updates
• Fix some QC bugs

Release 2.16

• Luciphor algo fixed to not use CID when having "auto" as activation type
• Quoting file names in merge PTMs

Release 2.15

• Bugfix release to revert splicing target tryptic peptides from decoy proteins, which skewed the distribution

Release 2.14

• Bugfix PTM protein location off by one

Release 2.13

• Bugfix TMT18 and PTMs

Release 2.12

• TMT18 quant
• TIMS isobaric quant
• Throw out decoys that are targets before search
• Small fixes

Release 2.11

• Bugfix in MS1 quant where too large retention time tolerance was used
• MS1 quant RT/mz tolerances parametrized

Release 2.10

• More tolerance to set names with spaces etc
• Dynamic memory MSGF
• Error message for single-channel sample groups in DEqMS