Version update to 2.10

lehtiolab · Sep 1, 2022 · 2603177 · 2603177
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commit 2603177
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Showing 5 changed files with 13 additions and 6 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,7 +1,14 @@
 # lehtiolab/ddamsproteomics: Changelog
+## Version 2.10 [2022-09-02]
+- Bugfix to allow setnames with spaces etc (quoting)
+- Dynamic memory allocation for MSGF
+- Error message for often occurring DEqMS with only one channel in a sample group
+
+
 ## Version 2.9 [2022-06-02]
 - Bugfix to allow for user-formatted modification specifications again
 
+
 ## Version 2.8 [2022-05-22]
 - Total proteome normalization had no keep-na-psms enabled when that was desired, fixed
 - Produce PEP column in merged peptide table (was only in PSM table earlier)

diff --git a/Dockerfile b/Dockerfile
@@ -5,4 +5,4 @@ RUN apt update && apt install -y fontconfig && apt clean -y
 
 COPY environment.yml /
 RUN conda env create -f /environment.yml && conda clean -a
-ENV PATH /opt/conda/envs/ddamsproteomics-2.9/bin:$PATH
+ENV PATH /opt/conda/envs/ddamsproteomics-2.10/bin:$PATH
diff --git a/Singularity b/Singularity
@@ -3,10 +3,10 @@ Bootstrap:docker
 
 %labels
     DESCRIPTION Singularity image containing all requirements for the lehtiolab/ddamsproteomics pipeline
-    VERSION 2.9
+    VERSION 2.10
 
 %environment
-    PATH=/opt/conda/envs/ddamsproteomics-2.9/bin:$PATH
+    PATH=/opt/conda/envs/ddamsproteomics-2.10/bin:$PATH
     export PATH
 
 %files

diff --git a/environment.yml b/environment.yml
@@ -1,4 +1,4 @@
-name: ddamsproteomics-2.9
+name: ddamsproteomics-2.10
 channels:
   - bioconda
   - conda-forge

diff --git a/nextflow.config b/nextflow.config
@@ -20,7 +20,7 @@ params {
 }
 
 // Container slug. Stable releases should specify release tag!
-process.container = 'lehtiolab/ddamsproteomics:2.9'
+process.container = 'lehtiolab/ddamsproteomics:2.10'
 //process.container = 'ddamsproteomics:dev'
 
 profiles {
@@ -89,7 +89,7 @@ manifest {
   description = 'Quantitative DDA MS proteomics pipeline'
   mainScript = 'main.nf'
   nextflowVersion = '>=20.01.0'
-  version = '2.9'
+  version = '2.10'
 }
 
 // Function to ensure that resource requirements don't go beyond