Version bump and changelog for release 2.16

lehtiolab · Aug 31, 2023 · bcb5705 · bcb5705
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,4 +1,9 @@
 # lehtiolab/ddamsproteomics: Changelog
+## Version 2.16 [2023-08-30]
+- Fixed Luciphor algorithm selection to use HCD when activation type is auto/any, and not use CID then
+- Fix mergePTM process file quoting when only one set in it
+
+
 ## Version 2.15 [2023-08-25]
 - Revert to --ignore-target-hits for decoy generation, do not remove decoy tryptic peptides that match target
 

diff --git a/Dockerfile b/Dockerfile
@@ -5,4 +5,4 @@ RUN apt update && apt install -y fontconfig && apt clean -y
 
 COPY environment.yml /
 RUN conda env create -f /environment.yml && conda clean -a
-ENV PATH /opt/conda/envs/ddamsproteomics-2.15/bin:$PATH
+ENV PATH /opt/conda/envs/ddamsproteomics-2.16/bin:$PATH
diff --git a/Singularity b/Singularity
@@ -3,10 +3,10 @@ Bootstrap:docker
 
 %labels
     DESCRIPTION Singularity image containing all requirements for the lehtiolab/ddamsproteomics pipeline
-    VERSION 2.15
+    VERSION 2.16
 
 %environment
-    PATH=/opt/conda/envs/ddamsproteomics-2.15/bin:$PATH
+    PATH=/opt/conda/envs/ddamsproteomics-2.16/bin:$PATH
     export PATH
 
 %files

diff --git a/environment.yml b/environment.yml
@@ -1,4 +1,4 @@
-name: ddamsproteomics-2.15
+name: ddamsproteomics-2.16
 channels:
   - bioconda
   - conda-forge

diff --git a/nextflow.config b/nextflow.config
@@ -20,7 +20,7 @@ params {
 }
 
 // Container slug. Stable releases should specify release tag!
-process.container = 'lehtiolab/ddamsproteomics:2.15'
+process.container = 'lehtiolab/ddamsproteomics:2.16'
 //process.container = 'ddamsproteomics:dev'
 
 profiles {
@@ -90,7 +90,7 @@ manifest {
   description = 'Quantitative DDA MS proteomics pipeline'
   mainScript = 'main.nf'
   nextflowVersion = '>=20.01.0'
-  version = '2.15'
+  version = '2.16'
 }
 
 // Function to ensure that resource requirements don't go beyond