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18 Open 17 Closed
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Issues list

Rotate nucleotides in output
#51 opened Oct 14, 2021 by wdecoster
Properly sort chromosomes in output file
#50 opened Oct 14, 2021 by wdecoster
dustspec.split("'")[1].split("_") fails with decoy contigs
#49 opened Oct 14, 2021 by wdecoster
1
How do sequences end up being empty?
#48 opened Oct 14, 2021 by wdecoster
_validate_path writes a 'test' directory
#47 opened Oct 14, 2021 by wdecoster
setup CI
#45 opened Oct 14, 2021 by wdecoster
output number of reads supporting a call
#40 opened Oct 13, 2021 by wdecoster
1
Not crucial now: output to VCF while running
#35 opened Oct 13, 2021 by wdecoster
1
Find heuristics to pre-filter insertions that we don't want spoa to spend too much time on
#33 opened Oct 13, 2021 by wdecoster
4
Github - Methods + Results
#31 opened Oct 13, 2021 by lfpaulin
Analysis: how good is STRdust
#29 opened Oct 13, 2021 by lfpaulin
Github: add how to install
#28 opened Oct 13, 2021 by lfpaulin
@annerilotter
1
Test STRdust to human and/or tomato data
#22 opened Oct 12, 2021 by lfpaulin
Take one or a few simulated STRs and see if the output makes sense!
#20 opened Oct 12, 2021 by wdecoster
@lfpaulin
2
bonus: add parallelization
#19 opened Oct 12, 2021 by wdecoster
Review function horizontal_merge()
#13 opened Oct 12, 2021 by wdecoster
1
Run tricolor on our simulated data
#8 opened Oct 11, 2021 by wdecoster
2
Run straglr on simulated data
#7 opened Oct 11, 2021 by wdecoster
2
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