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Breeding and Genetics course

HTML 4 Updated Jun 6, 2023

Tidy Plots for Scientific Papers

R 347 8 Updated Dec 22, 2024

Stochastic-Lanczos-Expedited Mixed Models

C++ 9 2 Updated Aug 23, 2024

Fortran library to handle sparse matrices

Fortran 19 2 Updated Dec 9, 2024

Data Apps & Dashboards for Python. No JavaScript Required.

Python 21,741 2,092 Updated Dec 20, 2024
Julia 2 1 Updated Apr 15, 2024

Imputation via haplotype blocks

R 4 Updated Sep 21, 2022

R-package: Calculation of haplotype blocks and libraries

R 30 2 Updated Mar 12, 2024

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

R 766 158 Updated Aug 4, 2024

R Debugger Extension for Visual Studio Code

TypeScript 172 11 Updated Sep 8, 2024
Fortran 2 Updated Nov 7, 2024

Collection of awesome LLM apps with RAG using OpenAI, Anthropic, Gemini and opensource models.

Python 10,153 1,028 Updated Dec 29, 2024

Fast Python/Cython implementation of the PCAone Halko algorithm

Python 2 Updated Nov 10, 2024

Software for ancestry estimation in unrelated individuals

Python 15 Updated Dec 29, 2024

A set of tutorials for msprime and tskit.

Jupyter Notebook 20 15 Updated Dec 12, 2024

A repo of short "vignettes" illustrating statistical concepts

HTML 301 86 Updated Mar 4, 2024

Deregression based on Garrick et al. (2009). With pedigree and files containing EBVs, Deregression is undertaken and deregressed EVC, deregressed reliabilities and weights are outputted.

R 4 4 Updated Jul 10, 2016
R 1 Updated Jun 10, 2024

A complete pipeline for metagenomic analysis

C 387 81 Updated Dec 3, 2024

Call LLM APIs from R

R 251 37 Updated Dec 19, 2024

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

JavaScript 12,817 44,717 Updated Dec 30, 2024
Python 39 10 Updated Dec 18, 2024

Gitmoji tool for git commit messages in VSCode

TypeScript 279 30 Updated Jun 5, 2024

The local version of high-definition likelihood inference of genetic correlations (HDL-L)

R 9 Updated Nov 28, 2024

Inbreeding and Numerator Relationship Coefficients

R 1 Updated Sep 16, 2024

igraph R package

R 572 205 Updated Dec 20, 2024

sHDL

R 5 Updated Oct 8, 2024

High-definition likelihood inference of genetic correlations (HDL)

R 101 28 Updated May 2, 2024

Vector Approximate Message Passing inference framework for GWAS

C++ 14 4 Updated Oct 14, 2024
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