MPH is a C++ program for fast REML estimation of genetic (co)variance components.

A Combined Crossbred and Purebred Matrix for Combined Crossbred and Purebred Selection method.

Statistical tools for Quantitative Genetic Analyses

Positron, a next-generation data science IDE

Linear optimization software

Align chip probes to a reference genome

Helpful handful of programs, completely open-source and free

Vector Approximate Message Passing inference framework for GWAS

High-definition likelihood inference of genetic correlations (HDL)

sHDL

igraph R package

Inbreeding and Numerator Relationship Coefficients

The local version of high-definition likelihood inference of genetic correlations (HDL-L)

A complete pipeline for metagenomic analysis

Deregression based on Garrick et al. (2009). With pedigree and files containing EBVs, Deregression is undertaken and deregressed EVC, deregressed reliabilities and weights are outputted.

Software for ancestry estimation in unrelated individuals

Fast Python/Cython implementation of the PCAone Halko algorithm

very fast scatterplots for R

R Debugger Extension for Visual Studio Code

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

R-package: Calculation of haplotype blocks and libraries

Imputation via haplotype blocks

Data Apps & Dashboards for Python. No JavaScript Required.

Fortran library to handle sparse matrices

Stochastic-Lanczos-Expedited Mixed Models

Tidy Plots for Scientific Papers