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32 Open 77 Closed
32 Open 77 Closed
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Issues list

Characterization of samples with large deletions in key genes as resistant
#226 opened Apr 10, 2023 by frankambrosio3
update default kleborate docker to v2.3.2
#219 opened Mar 7, 2023 by kapsakcj
output kraken2 database used for analysis enhancement New feature or request
#215 opened Feb 22, 2023 by kapsakcj
amrfinderplus improvements
#210 opened Feb 10, 2023 by kapsakcj
2
Add abritAMR for optional AMR detection enhancement New feature or request
#208 opened Feb 7, 2023 by michellescribner
Add BUSCO contamination to qc_check task
#206 opened Jan 31, 2023 by michellescribner
Add kleborate virulence score output for TheiaProk
#196 opened Jan 4, 2023 by frankambrosio3
@frankambrosio3
FKS1 detection (C.auris) priority:3 (medium) normal priority/urgency
#157 opened Oct 5, 2022 by kevinlibuit
@frankambrosio3
1
Average read length after trimming priority:3 (medium) normal priority/urgency
#153 opened Sep 30, 2022 by kevinlibuit
@kapsakcj @sage-wright
AMR genes csv output file enhancement New feature or request priority:3 (medium) normal priority/urgency
#150 opened Sep 23, 2022 by frankambrosio3
add fastq-scan additional outputs - read lengths enhancement New feature or request priority:1 (low) lowest priority. On the back burner
#147 opened Sep 16, 2022 by kapsakcj
add kraken to theiaprok
#144 opened Aug 31, 2022 by sage-wright
1
cgMLST enhancement New feature or request priority:1 (low) lowest priority. On the back burner
#140 opened Aug 24, 2022 by emmadoughty
@kapsakcj @emmadoughty @michellescribner
Vibrio spp sub-workflow for TheiaProk enhancement New feature or request priority:1 (low) lowest priority. On the back burner
#139 opened Aug 24, 2022 by emmadoughty
2
subsample reads before processing
#112 opened Jul 1, 2022 by kevinlibuit
2
Taxon table export unable to parse excel-saved files priority:2 second lowest priority, moving off the back burner
#107 opened Jun 29, 2022 by kevinlibuit
@michellescribner
1
Centrifuge workflow enhancement New feature or request priority:2 second lowest priority, moving off the back burner
#97 opened Jun 23, 2022 by frankambrosio3
MycoSNP Dynamic Reference Selection enhancement New feature or request priority:3 (medium) normal priority/urgency
#96 opened Jun 22, 2022 by frankambrosio3
@frankambrosio3
Taxon-like functionality with AMR genes enhancement New feature or request priority:1 (low) lowest priority. On the back burner
#93 opened Jun 22, 2022 by frankambrosio3
Taxon table failed to upload without error
#90 opened Jun 13, 2022 by michellescribner
1
Mashtree branch labels
#82 opened May 27, 2022 by frankambrosio3
MLST assigned schemas
#75 opened May 12, 2022 by kevinlibuit
@kapsakcj @sage-wright
Enterobacter Species
#74 opened May 12, 2022 by kevinlibuit
Mycobacterium species assignments
#73 opened May 12, 2022 by kevinlibuit
Add tb-profiler update_tbdb --branch who to tbprofiler task enhancement New feature or request
#67 opened May 4, 2022 by frankambrosio3
@frankambrosio3
ProTip! Exclude everything labeled bug with -label:bug.