changed hic_aligner setting for ci test

sanger-tol · Jul 12, 2024 · a6edc93 · a6edc93
1 parent a66eaf3
commit a6edc93
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/assets/test.yaml b/assets/test.yaml
@@ -9,7 +9,7 @@ dataset:
     reads:
       - reads: /lustre/scratch123/tol/resources/nextflow/test-data/Undibacterium_unclassified/genomic_data/baUndUnlc1/hic-arima2/41741_2#7.sub.cram
 hic_motif: GATC,GANTC,CTNAG,TTAA
-hic_aligner: minimap2
+hic_aligner: bwamem2
 busco:
   lineage: bacteria_odb10
 mito: