bug in awk_filter_reads

sanger-tol · Jul 11, 2024 · a66eaf3 · a66eaf3
1 parent 88eeafb
commit a66eaf3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/awk_filter_reads.sh b/bin/awk_filter_reads.sh
@@ -1,2 +1,2 @@
 #remove the read number added earlier --yy5
-awk 'BEGIN{OFS="\t"}{if($1 ~ /^@/) {print} else {$2=and($2,compl(2048)); print substr($1,2),$2,$3,$4,$5,$6,$7,$8,$9,$10,$11}}'
+awk 'BEGIN{OFS="\t"}{if($1 ~ /^@/) {print} else {$2=and($2,compl(2048)); print substr($1,2),$2,$3,$4,$5,$6,$7,$8,$9,$10,$11}}'