🛠️ increase memory and remove sif file

papaemmelab · Jul 19, 2024 · 73822d5 · 73822d5
1 parent 801eaad
commit 73822d5
Show file tree

Hide file tree

Showing 2 changed files with 3 additions and 12 deletions.
diff --git a/main.nf b/main.nf
@@ -32,7 +32,7 @@ process runAmber {
     tag "AMBER on ${params.tumor}"
     publishDir "${params.outdir}/amber", mode: 'copy'
     cpus params.cores
-    memory '4 GB'
+    memory '32 GB'
     time '1h'
 
     input:
@@ -60,7 +60,7 @@ process runCobalt {
     tag "COBALT on ${params.tumor}"
     publishDir "${params.outdir}/cobalt", mode: 'copy'
     cpus params.cores
-    memory '4 GB'
+    memory '32 GB'
     time '1h'
 
     input:
@@ -87,7 +87,7 @@ process runPurple {
     tag "PURPLE on ${params.tumor}"
     publishDir "${params.outdir}/purple", mode: 'copy'
     cpus params.cores
-    memory '4 GB'
+    memory '32 GB'
     time '1h'
 
     input:

diff --git a/nextflow.config b/nextflow.config
@@ -38,15 +38,6 @@ profiles {
         process {
             executor = 'slurm'
             queue = 'componc_cpu'
-            withname:runPurple {
-                container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
-            }
-            withname:runAmber {
-                container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
-            }
-            withname:runCobalt {
-                container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
-            }
         }
     }