🛠️ add hpc_slurm profile

papaemmelab · Jul 19, 2024 · 801eaad · 801eaad
1 parent 5037488
commit 801eaad
Showing 1 changed file with 21 additions and 1 deletion.
diff --git a/nextflow.config b/nextflow.config
@@ -23,13 +23,33 @@ profiles {
     standard {
         process.executor = 'local'
     }
-    hpc {
+
+    hpc_lsf {
         singularity.enabled = true
         singularity.autoMounts = true
         process {
             executor = 'lsf'
         }
     }
+
+    hpc_slurm {
+        singularity.enabled = true
+        singularity.autoMounts = true
+        process {
+            executor = 'slurm'
+            queue = 'componc_cpu'
+            withname:runPurple {
+                container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
+            }
+            withname:runAmber {
+                container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
+            }
+            withname:runCobalt {
+                container = '/usersoftware/papaemme/isabl/local/purple/v0.1.0/purple_v0.1.0.sif'
+            }
+        }
+    }
+
     cloud {
         docker {
           enabled = true