🐛 Fix NA scenarios

README.md

@@ -322,12 +322,17 @@ const outputFile = 'IPSSMexample.annotated.xlsx'
 await annotateFile(inputFile, outputFile)
 ```
 
-
 <!-- Anchor to target cli help -->
 <span id="inputs" />
 
 ## :spiral_notepad: Input Variables Definition
 
+Note: Values for mutations:
+
+- `0` means wild-type (non-mutated)
+- `1` means mutated, and
+- `NA` means 'Not Asssesed'.
+
 | Category                   | Variable Explanation          | Variable     | Unit                         | Possible Value                                              |
 |----------------------------|-------------------------------|--------------|------------------------------|-------------------------------------------------------------|
 | clinical                   | Hemoglobin                    | `HB`         | numerical, in g/dL           | [`4`-`20`]                                                      |
@@ -377,3 +382,16 @@ await annotateFile(inputFile, outputFile)
 ## :question: Question
 
 Any questions feel free to add an [issue](https://github.com/papaemmelab/ipssm-js/issues) to this repo or to contact [ElsaB](https://elsab.github.io/).
+
+## :code: Development
+
+```bash
+# Install dependencies
+npm install
+
+# Run the development server
+npm run serve
+
+# Run tests
+npm test
+```

src/index.ts

@@ -1,4 +1,4 @@
-import { PatientInput, PatientOutput, IpssmScores, PatientForIpssr, CsvData } from './types'
+import { PatientInput, PatientOutput, IpssmScores, PatientForIpssr } from './types'
 import { processInputs } from './utils/preprocess'
 import { computeIpssm, computeIpssr as ipssr } from './utils/risk'
 import { parseCsv, parseXlsx, writeCsv, writeXlsx } from './utils/parseFile'

src/utils/fields.ts

@@ -212,7 +212,7 @@ genes.forEach((gene) => {
     values: [    
       0,
       1,
-      'N/A',
+      'NA',
     ],
   }
 })