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63 Open 86 Closed
63 Open 86 Closed
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Issues list

Singularity no space left in tmp directory
#189 opened Aug 9, 2024 by SR-Epi-lab
Skip deduplication for libraries with UMI
#188 opened Mar 25, 2024 by ChristopherBarrington
which reference should I cite?
#185 opened Jan 7, 2023 by jane373
1
filter with non-int columns
#184 opened Nov 23, 2022 by Phlya
distiller 0.3.5 roadmap
#182 opened Nov 8, 2022 by agalitsyna
6 tasks
1
Support of minimap2, bam mem2 and bwa aln
#181 opened Nov 8, 2022 by agalitsyna
1
update example cluster config - to match current distiller
#179 opened Oct 6, 2022 by sergpolly
1
bam files recycling
#178 opened Aug 10, 2022 by agalitsyna
library (group) names can't be numerical
#176 opened Jul 25, 2022 by Phlya
how memory limit gets specified in cluster using
#175 opened Jun 16, 2022 by ryao-mdanderson
Optional direct fastq downloads from ENA instead of sra-tools enhancement
#174 opened Mar 17, 2022 by nvictus
Bug: split: output file suffixes exhausted
#169 opened Nov 11, 2021 by efriman
process from 4DN? enhancement
#162 opened Dec 8, 2020 by gfudenberg
add phasing
#158 opened Oct 19, 2020 by golobor
fastq-dump fails with "This sra toolkit installation has not been configured." when docker is disabled help wanted question
#157 opened Oct 16, 2020 by agalitsyna
1
add fastp trimmer to the docker image so users can do trimming if needed
#153 opened Jul 3, 2020 by mimakaev
input verification - check if the folder doesn't already have ./work and ./results from tests
#150 opened Mar 23, 2020 by golobor
Input verification - ensure no duplicated input files
#147 opened Jan 26, 2020 by Phlya
built-in adaptor trimming
#146 opened Dec 31, 2019 by gspracklin
4
sra download seems to be broken now - some of the ftp links lead nowhere help wanted
#145 opened Nov 13, 2019 by sergpolly
11
Have an option to use fastq-dump even to download a whole .sra file
#144 opened Sep 11, 2019 by mimakaev
having no map options, i.e. empty dict, leads to nextflow error
#142 opened May 14, 2019 by sergpolly
1
distiller (bwa mem) cannot handle Hi-C data sequenced with 25bp enhancement question
#141 opened May 14, 2019 by sergpolly
@golobor @nvictus
9
distiller is failing at bin_zoom_library_pairs with new reference genome
#137 opened Mar 29, 2019 by gibcus
9
travis is failing to download the test sample fastq-s
#135 opened Mar 8, 2019 by sergpolly
2
ProTip! no:milestone will show everything without a milestone.