Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Optional direct fastq downloads from ENA instead of sra-tools #174

Open
nvictus opened this issue Mar 17, 2022 · 0 comments
Open

Optional direct fastq downloads from ENA instead of sra-tools #174

nvictus opened this issue Mar 17, 2022 · 0 comments
Labels
enhancement

Comments

@nvictus
Copy link
Member

nvictus commented Mar 17, 2022

Could be a nice alternative when fastq-dump fails.

I did hack a downloader myself a while back, but ffq seems to do the job of fetching JSON metadata for many types of accessions. Maybe such JSONs could be provided as input in the config file?
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@nvictus