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📦 Add new command nf-core rocrate to create a Research Object (RO) crate for a pipeline (continuation from #2680) [skip changelog] #3240

Merged
merged 17 commits into from
Nov 28, 2024
Merged

📦 Add new command nf-core rocrate to create a Research Object (RO) crate for a pipeline (continuation from #2680) [skip changelog] #3240

merged 17 commits into from
Nov 28, 2024
+956 −283

Commits on Oct 23, 2024

  1. move test in correct directory

    @mashehu
    mashehu committed Oct 23, 2024
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  2. fix tests

    @mashehu
    mashehu committed Oct 23, 2024
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Commits on Oct 24, 2024

  1. Merge branch 'dev' of github.com:nf-core/tools into add-rocreate 

    # Conflicts:
#	nf_core/pipelines/rocrate.py
#	tests/pipelines/test_rocrate.py
    @mashehu
    mashehu committed Oct 24, 2024
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  2. run tests without commiting ro-crate

    @mashehu
    mashehu committed Oct 24, 2024
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  3. add ro-crate creation to pipelines create command

    @mashehu
    mashehu committed Oct 24, 2024
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  4. fix command import

    @mashehu
    mashehu committed Oct 24, 2024
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  5. add rocrate to skip features

    @mashehu
    mashehu committed Oct 24, 2024
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  6. remove schema loading, because it is not needed anymore

    @mashehu
    mashehu committed Oct 24, 2024
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  7. update snapshots

    @mashehu
    mashehu committed Oct 24, 2024
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  8. try to fix coverage report generation

    @mashehu
    mashehu committed Oct 24, 2024
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  9. Merge branch 'add-rocreate' of github.com:mashehu/tools into add-rocr… 

    …eate
    @mashehu
    mashehu committed Oct 24, 2024
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Commits on Nov 27, 2024

  1. Merge branch 'dev' of github.com:nf-core/tools into add-rocreate 

    # Conflicts:
#	nf_core/pipelines/create/template_features.yml
    @mashehu
    mashehu committed Nov 27, 2024
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  2. update snapshots

    @mashehu
    mashehu committed Nov 27, 2024
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  3. add more tests

    @mashehu
    mashehu committed Nov 27, 2024
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  4. Merge branch 'add-rocreate' of github.com:mashehu/tools into add-rocr… 

    …eate
    @mashehu
    mashehu committed Nov 27, 2024
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  5. enable zip output

    @mashehu
    mashehu committed Nov 27, 2024
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Commits on Nov 28, 2024

  1. Update nf_core/pipelines/create/template_features.yml

    @mirpedrol
    mirpedrol authored Nov 28, 2024
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