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Pull requests: nf-core/tools

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Pull requests list

Download: Seqera containers Patch 2
#3293 opened Nov 22, 2024 by MatthiasZepper Loading…
3 tasks done
build: Setup VS Code tests
#3292 opened Nov 21, 2024 by edmundmiller Loading…
1 of 4 tasks
@edmundmiller
2
Fix usage of cache path and implement parallized testing
#3291 opened Nov 21, 2024 by mashehu Loading…
Template: Add gpu profile
#3272 opened Nov 7, 2024 by mashehu Loading… 3.2
16
3262 Fix pipeline lint bug for pipelines with minimal template features
#3265 opened Oct 30, 2024 by awgymer • Draft
4 tasks
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.2
10
1929: local modules use remote format from template
#3256 opened Oct 28, 2024 by awgymer • Draft
4 tasks
7
📦 Add new command nf-core rocrate to create a Research Object (RO) crate for a pipeline (continuation from #2680) [skip changelog]
#3240 opened Oct 23, 2024 by mashehu Loading… 3.1
1
allow mixed str and dict in lint config WIP Work in progress
#3228 opened Oct 17, 2024 by mashehu Loading… 3.1
8
Container cache download download nf-core download WIP Work in progress
#3163 opened Sep 7, 2024 by muffato • Draft
1 of 4 tasks
3.2
2
@muffato
11
Allow main as default channel
#3142 opened Aug 27, 2024 by mashehu Loading… 3.1
1
1
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
2
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
2
Automating pytest migration automation nf-test
#3138 opened Aug 23, 2024 by GallVp • Draft
2
Schema: rewrite to run local only and handle newer schema versions WIP Work in progress
#3117 opened Aug 14, 2024 by mashehu Loading…
3
Support version topic channels
#3093 opened Aug 1, 2024 by edmundmiller Loading…
4 tasks
@edmundmiller
5
feat: Install subworkflows with modules from different remotes enhancement
#3083 opened Jul 29, 2024 by jvfe Loading…
2 of 4 tasks
3.1
@jvfe
24
fix the nested list bug that makes email not be delivered
#3081 opened Jul 25, 2024 by HaidYi Loading…
2 of 4 tasks
12
ci: Run checks on renovate branches to avoid creating and merging PRs
#3018 opened Jun 6, 2024 by edmundmiller • Draft
@edmundmiller
1
Add nf-core configs create sub command (attempt 2)
#3001 opened May 25, 2024 by jfy133 • Draft
1 of 9 tasks
2
Allow nf-core download -r to download commits awaiting-changes Needs changes after a review. Remove label when ready to be reviewed again. download nf-core download Stale
#2906 opened Apr 4, 2024 by fellen31 • Draft
4 tasks
5
Plugin to view .nextflow.log files using toolong WIP Work in progress
#2895 opened Mar 22, 2024 by ewels • Draft
2 of 4 tasks
1
🩹 added patch command for subworkflows
#2861 opened Mar 18, 2024 by ctuni Loading… 3.1
1
6
Add nf-core configs create sub command
#2852 opened Mar 18, 2024 by jfy133 • Draft
4 tasks
1
1
Modules: Have component_files_identical check for new optional files in modules
#2816 opened Feb 29, 2024 by asp8200 Loading…
4 tasks
19
ProTip! Exclude everything labeled bug with -label:bug.