fix command import

nf-core · Oct 24, 2024 · 5c4a5e6 · 5c4a5e6
1 parent 94bddc2
commit 5c4a5e6
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/nf_core/pipelines/create/create.py b/nf_core/pipelines/create/create.py
@@ -21,7 +21,7 @@
 from nf_core.pipelines.create.utils import CreateConfig, features_yml_path, load_features_yaml
 from nf_core.pipelines.create_logo import create_logo
 from nf_core.pipelines.lint_utils import run_prettier_on_file
-from nf_core.rocrate import ROCrate
+from nf_core.pipelines.rocrate import ROCrate
 from nf_core.utils import LintConfigType, NFCoreTemplateConfig
 
 log = logging.getLogger(__name__)

diff --git a/nf_core/pipelines/rocrate.py b/nf_core/pipelines/rocrate.py
@@ -177,14 +177,14 @@ def make_workflow_rocrate(self) -> None:
         )
 
         # add readme as description
-        readme = Path("README.md")
+        readme = self.pipeline_dir / "README.md"
 
         try:
             self.crate.description = readme.read_text()
         except FileNotFoundError:
             log.error(f"Could not find README.md in {self.pipeline_dir}")
         # get license from LICENSE file
-        license_file = Path("LICENSE")
+        license_file = self.pipeline_dir / "LICENSE"
         try:
             license = license_file.read_text()
             if license.startswith("MIT"):