nf-test linting tags #4596
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Create a pipeline and test it | |
on: | |
push: | |
branches: | |
- dev | |
pull_request: | |
release: | |
types: [published] | |
# Cancel if a newer run is started | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
env: | |
NXF_ANSI_LOG: false | |
jobs: | |
RunTestWorkflow: | |
runs-on: ubuntu-latest | |
env: | |
NXF_ANSI_LOG: false | |
strategy: | |
matrix: | |
NXF_VER: | |
- "23.04.0" | |
- "latest-everything" | |
steps: | |
- uses: actions/checkout@v4 | |
name: Check out source-code repository | |
- name: Set up Python 3.12 | |
uses: actions/setup-python@v4 | |
with: | |
python-version: 3.12 | |
- name: Install python dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install . | |
- name: Install Nextflow | |
uses: nf-core/setup-nextflow@v1 | |
with: | |
version: ${{ matrix.NXF_VER }} | |
- name: Run nf-core/tools | |
run: | | |
nf-core --log-file log.txt create -n testpipeline -d "This pipeline is for testing" -a "Testing McTestface" --plain | |
nextflow run nf-core-testpipeline -profile test,docker --outdir ./results | |
- name: Upload log file artifact | |
if: ${{ always() }} | |
uses: actions/upload-artifact@v3 | |
with: | |
name: nf-core-log-file | |
path: log.txt |