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🩹 added patch command for subworkflows #8126

🩹 added patch command for subworkflows

🩹 added patch command for subworkflows #8126

Triggered via pull request November 21, 2024 09:58
@ewelsewels
synchronize #2861
ctuni:master
Status Success
Total duration 18m 9s
Artifacts 53

pytest.yml

on: pull_request
Matrix: setup
Get test file matrix
5s
Get test file matrix
Matrix: test
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53 warnings
Run pipelines/lint/test_actions_awstest.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_bump_versions.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_info.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_schema_validation.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_ci.py with Python 3.8 on ubuntu-latest
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Run modules/test_create.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_unchanged.py with Python 3.8 on ubuntu-latest
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Run pipelines/lint/test_configs.py with Python 3.8 on ubuntu-latest
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Run modules/test_install.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nfcore_yml.py with Python 3.8 on ubuntu-latest
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Run pipelines/lint/test_version_consistency.py with Python 3.8 on ubuntu-latest
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Run pipelines/lint/test_plugin_includes.py with Python 3.8 on ubuntu-latest
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Run pipelines/lint/test_merge_markers.py with Python 3.8 on ubuntu-latest
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Run pipelines/lint/test_modules_json.py with Python 3.8 on ubuntu-latest
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Run pipelines/lint/test_files_exist.py with Python 3.8 on ubuntu-latest
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Run modules/test_patch.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_bump_version.py with Python 3.8 on ubuntu-latest
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Run modules/test_list.py with Python 3.8 on ubuntu-latest
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Run pipelines/lint/test_template_strings.py with Python 3.8 on ubuntu-latest
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Run pipelines/lint/test_multiqc_config.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_create.py with Python 3.8 on ubuntu-latest
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Run pipelines/lint/test_nextflow_config.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_download.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_list.py with Python 3.8 on ubuntu-latest
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Run test_pipelines.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_refgenie.py with Python 3.8 on ubuntu-latest
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Run test_test_utils.py with Python 3.8 on ubuntu-latest
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Run test_cli.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_create_logo.py with Python 3.8 on ubuntu-latest
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Run test_subworkflows.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_params_file.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_lint.py with Python 3.8 on ubuntu-latest
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Run test_lint_utils.py with Python 3.8 on ubuntu-latest
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Run test_modules.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_create_app.py with Python 3.8 on ubuntu-latest
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Run subworkflows/test_create.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_json.py with Python 3.8 on ubuntu-latest
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Run subworkflows/test_info.py with Python 3.8 on ubuntu-latest
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Run subworkflows/test_list.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_sync.py with Python 3.8 on ubuntu-latest
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Run modules/test_update.py with Python 3.8 on ubuntu-latest
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Run test_utils.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_patch.py with Python 3.8 on ubuntu-latest
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Run subworkflows/test_remove.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_launch.py with Python 3.8 on ubuntu-latest
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Run pipelines/test_schema.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_install.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_lint.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_lint.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_update.py with Python 3.8 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_remove.py with Python 3.8 on ubuntu-latest
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Run test_components.py with Python 3.8 on ubuntu-latest
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Artifacts

Produced during runtime
Name Size
coverage_modules__test_bump_versions.py
5.83 KB
coverage_modules__test_create.py
5.77 KB
coverage_modules__test_info.py
5.9 KB
coverage_modules__test_install.py
5.83 KB
coverage_modules__test_lint.py
7.07 KB
coverage_modules__test_list.py
5.88 KB
coverage_modules__test_modules_json.py
5.93 KB
coverage_modules__test_patch.py
6.04 KB
coverage_modules__test_remove.py
5.85 KB
coverage_modules__test_update.py
6.06 KB
coverage_pipelines__lint__test_actions_awsfulltest.py
6.55 KB
coverage_pipelines__lint__test_actions_awstest.py
6.54 KB
coverage_pipelines__lint__test_actions_ci.py
6.55 KB
coverage_pipelines__lint__test_actions_schema_validation.py
6.55 KB
coverage_pipelines__lint__test_configs.py
6.55 KB
coverage_pipelines__lint__test_files_exist.py
6.56 KB
coverage_pipelines__lint__test_files_unchanged.py
6.56 KB
coverage_pipelines__lint__test_merge_markers.py
6.55 KB
coverage_pipelines__lint__test_modules_json.py
6.55 KB
coverage_pipelines__lint__test_multiqc_config.py
6.61 KB
coverage_pipelines__lint__test_nextflow_config.py
6.59 KB
coverage_pipelines__lint__test_nfcore_yml.py
6.55 KB
coverage_pipelines__lint__test_plugin_includes.py
6.54 KB
coverage_pipelines__lint__test_template_strings.py
6.85 KB
coverage_pipelines__lint__test_version_consistency.py
6.6 KB
coverage_pipelines__test_bump_version.py
5.31 KB
coverage_pipelines__test_create.py
5.25 KB
coverage_pipelines__test_create_app.py
5.27 KB
coverage_pipelines__test_create_logo.py
5.25 KB
coverage_pipelines__test_download.py
5.63 KB
coverage_pipelines__test_launch.py
5.41 KB
coverage_pipelines__test_lint.py
7.02 KB
coverage_pipelines__test_list.py
5.13 KB
coverage_pipelines__test_params_file.py
5.34 KB
coverage_pipelines__test_refgenie.py
5.16 KB
coverage_pipelines__test_schema.py
5.35 KB
coverage_pipelines__test_sync.py
5.33 KB
coverage_subworkflows__test_create.py
6.62 KB
coverage_subworkflows__test_info.py
6.73 KB
coverage_subworkflows__test_install.py
6.72 KB
coverage_subworkflows__test_lint.py
6.88 KB
coverage_subworkflows__test_list.py
6.71 KB
coverage_subworkflows__test_patch.py
6.78 KB
coverage_subworkflows__test_remove.py
6.72 KB
coverage_subworkflows__test_update.py
6.85 KB
coverage_test_cli.py
6.95 KB
coverage_test_components.py
5.5 KB
coverage_test_lint_utils.py
5.11 KB
coverage_test_modules.py
5.75 KB
coverage_test_pipelines.py
5.12 KB
coverage_test_subworkflows.py
6.43 KB
coverage_test_test_utils.py
5.12 KB
coverage_test_utils.py
5.29 KB