fix(narfmap): Clean up log error

nf-core · Jul 8, 2024 · 574f95b · 574f95b
1 parent 50dff9b
commit 574f95b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/nf-core/narfmap/align/main.nf b/modules/nf-core/narfmap/align/main.nf
@@ -34,7 +34,7 @@ process NARFMAP_ALIGN {
         $args \\
         --num-threads $task.cpus \\
         $reads_command \\
-        2> ${prefix}.narfmap.log \\
+        2> >(tee ${prefix}.narfmap.log >&2) \\
         | samtools $samtools_command $args2 --threads $task.cpus -o ${prefix}.bam -
 
     cat <<-END_VERSIONS > versions.yml