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Issues: nf-core/modules

Caused by: java.nio.channels.OverlappingFileLockException
#6664 by edmundmiller was closed Nov 18, 2024
Closed 13
Batch module updates - Fall 2024
#5828 opened Jun 18, 2024 by edmundmiller
Open 15
Renovate Dashboard 🤖
#4211 opened Oct 24, 2023 by renovate bot
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455 Open 1,351 Closed
455 Open 1,351 Closed
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Issues list

new module: CTAT/SPLICING new module Adding a new module
#7057 opened Nov 22, 2024 by matthdsm
4 tasks done
@matthdsm @nvnieuwk
1
[FEATURE] move nf-test tests from gatk4/asereadcounter in a tests folder
#7046 opened Nov 21, 2024 by maxulysse
Remove params.hisat2_build_memory from hisat2/build
#7045 opened Nov 21, 2024 by maxulysse
Address limitations of using nf-test sharding
#7018 opened Nov 18, 2024 by edmundmiller
1
Create conda-fail.yml on Conda CI failures
#7017 opened Nov 18, 2024 by edmundmiller
Handle GitHub runners possibly running out of space
#7016 opened Nov 18, 2024 by edmundmiller
2
update module: Dragonflye to v1.2.1 update module
#7015 opened Nov 18, 2024 by Daniel-VM
3 of 4 tasks
new subworkflow: fasta_create_index_bismark_bwameth new subworkflow
#7009 opened Nov 17, 2024 by sateeshperi
4 tasks done
1
@sateeshperi
Update quartonotebook to use wave when conda support comes
#7006 opened Nov 16, 2024 by edmundmiller
new subworkflow: fastq_align_pileup_biscuit new subworkflow
#6974 opened Nov 12, 2024 by sateeshperi
4 tasks done
@sateeshperi
new subworkflow: fastq_align_dedup_bwameth new subworkflow
#6973 opened Nov 12, 2024 by sateeshperi
4 tasks done
1
new module: NANOQC new module Adding a new module
#6968 opened Nov 11, 2024 by lfreitasl
4 tasks done
1
@lfreitasl
new module: AGAT/SPFLAGSHORTINTRONS new module Adding a new module
#6963 opened Nov 9, 2024 by GallVp
4 tasks done
@GallVp
new module: HOSTILE/CLEAN new module Adding a new module
#6947 opened Nov 7, 2024 by jfy133
3 of 4 tasks
new module: LIFTON new module Adding a new module
#6944 opened Nov 6, 2024 by GallVp
4 tasks done
@GallVp
Migrate to nf-test for COREOGRAPH update module
#6941 opened Nov 6, 2024 by kbestak
4 tasks done
@kbestak
nf-test for Basicpy update module
#6927 opened Nov 4, 2024 by kbestak
4 tasks done
1
@kbestak
new module: gzrt aka gzrecover new module Adding a new module
#6918 opened Oct 31, 2024 by mazzalab
1
@mazzalab
new subworkflow: merqury new subworkflow
#6905 opened Oct 30, 2024 by stephenturner
4 tasks done
@stephenturner
2
new subworkflow: fastq_align_parabricks new subworkflow
#6894 opened Oct 29, 2024 by famosab
4 tasks done
1
@famosab @Furentsu
1
[FEATURE] FASTQSCREEN_FASTQSCREEN should accept multiple inputs with a single database
#6890 opened Oct 29, 2024 by ferenckata
2
pigz uncompress missing backslash bug Something isn't working
#6877 opened Oct 28, 2024 by ljwharbers
2 tasks done
1
new module: STIMULUS/CHECKTORCHMODEL new module Adding a new module
#6872 opened Oct 28, 2024 by itrujnara
4 tasks done
1
@itrujnara
new module: stimulus/splitcsv new module Adding a new module
#6871 opened Oct 28, 2024 by yocra3
4 tasks done
1
@yocra3 @luisas
1
New module: dorado
#6866 opened Oct 28, 2024 by lucacozzuto
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