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Update README.md
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Added R_LIB_USER folder creation and SINGULARITY_CACHEDIR setting
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bnovak32 authored Nov 8, 2024
1 parent 283c0ab commit c4b100e
Showing 1 changed file with 6 additions and 1 deletion.
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Expand Up @@ -96,7 +96,7 @@ Once complete, a `singularity` folder containing the Singularity images will be
# Set R library path to current working directory
export R_LIBS_USER=$(pwd)/R_libs
# Create the specified R library path if it doesn't already exist
mkdir -p $R_LIBS
mkdir -p $R_LIBS_USER

# Set Singularity cache directory
export SINGULARITY_CACHEDIR=$(pwd)/singularity
Expand Down Expand Up @@ -217,6 +217,11 @@ If the reference table does not specify an annotations database for the target o
```bash
# Set R library path if not already set
export R_LIBS_USER=$(pwd)/R_libs
# Create the specified R library path if it doesn't already exist
mkdir -p $R_LIBS_USER

# Set Singularity cache directory if not already set
export SINGULARITY_CACHEDIR=$(pwd)/singularity

singularity exec \
--bind $(pwd):$(pwd) \
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