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Add updates for v1.2.3
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asaravia-butler authored Dec 5, 2024
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# Workflow change log

## [1.2.3](https://github.com/nasa/GeneLab_Data_Processing/tree/SW_AmpIllumina-B_1.2.3/Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B)
- Fixed broken decipher reference database links to the following:
- 16S: https://www2.decipher.codes/data/Downloads/TrainingSets/SILVA_SSU_r138_2019.RData
- ITS: https://www2.decipher.codes/data/Downloads/TrainingSets/UNITE_v2023_July2023.RData
- 18S: https://www2.decipher.codes/data/Downloads/TrainingSets/PR2_v4_13_March2021.RData
- Visualizations default setting is now set to TRUE
- Disable with optional `run_workflow.py` argument `--visualizations FALSE` or setting `config.yaml` `enable_visualizations` to "FALSE"

## [1.2.2](https://github.com/nasa/GeneLab_Data_Processing/tree/SW_AmpIllumina-B_1.2.2/Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B)
- Visualizations are now optional with the default being off.
- Enable with optional `run_workflow.py` argument `--visualizations TRUE` or setting `config.yaml` `enable_visualizations` to "TRUE"
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<br>

All previous workflow changes were associated with [version A of the GeneLab Amplicon Seq Illumina Pipeline](../../Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-A.md), and can be found in the [change log of the SW_AmpIllumina-A workflow](../SW_AmpIllumina-A/CHANGELOG.md).
All previous workflow changes were associated with [version A of the GeneLab Amplicon Seq Illumina Pipeline](../../Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-A.md), and can be found in the [change log of the SW_AmpIllumina-A workflow](../SW_AmpIllumina-A/CHANGELOG.md).

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