Skip to content

Commit

Permalink
Typo fixes
Browse files Browse the repository at this point in the history
  • Loading branch information
asaravia-butler authored Sep 11, 2024
1 parent 9a232e6 commit 0279deb
Showing 1 changed file with 5 additions and 5 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -29,8 +29,8 @@ Lauren Sanders (OSDR Project Scientist)
- samtools
- CAT
- GTDB-Tk
- HUMAnN3
- MetaPhIAn3
- HUMAnN
- MetaPhlAn
- In [step 14d](#14d-mag-taxonomic-classification), MAG taxonomic classification, added the new `--skip_ani_screen` argument to `gtdbtk classify_wf` to continue classifying genomes as in previous versions of GTDB-Tk, using mash and skani.

---
Expand Down Expand Up @@ -75,12 +75,12 @@ Lauren Sanders (OSDR Project Scientist)
|prodigal| 2.6.3 |[https://github.com/hyattpd/Prodigal#prodigal](https://github.com/hyattpd/Prodigal#prodigal)|
|KOFamScan| 1.3.0 |[https://github.com/takaram/kofam_scan#kofamscan](https://github.com/takaram/kofam_scan#kofamscan)|
|CAT| 5.2.3 |[https://github.com/dutilh/CAT#cat-and-bat](https://github.com/dutilh/CAT#cat-and-bat)|
|Metabat2| 2.15 |[https://bitbucket.org/berkeleylab/metabat/src/master/](https://bitbucket.org/berkeleylab/metabat/src/master/)|
|MetaBAT| 2.15 |[https://bitbucket.org/berkeleylab/metabat/src/master/](https://bitbucket.org/berkeleylab/metabat/src/master/)|
|checkm| 1.1.3 |[https://github.com/Ecogenomics/CheckM](https://github.com/Ecogenomics/CheckM)|
|GTDB-Tk| 2.4.0 |[https://github.com/Ecogenomics/GTDBTk](https://github.com/Ecogenomics/GTDBTk)|
|KEGGDecoder| 1.2.2 |[https://github.com/bjtully/BioData/tree/master/KEGGDecoder#kegg-decoder](https://github.com/bjtully/BioData/tree/master/KEGGDecoder#kegg-decoder)
|HUMAnN3| 3.9 |[https://huttenhower.sph.harvard.edu/humann3/](https://huttenhower.sph.harvard.edu/humann3/)|
|MetaPhlAn3| 4.1.0 |[https://github.com/biobakery/MetaPhlAn/tree/3.0](https://github.com/biobakery/MetaPhlAn/tree/3.0)|
|HUMAnN| 3.9 |[https://github.com/biobakery/humann](https://github.com/biobakery/humann)|
|MetaPhlAn| 4.1.0 |[https://github.com/biobakery/MetaPhlAn](https://github.com/biobakery/MetaPhlAn)|

---

Expand Down

0 comments on commit 0279deb

Please sign in to comment.