v3.1.2

What's Changed

• fix #211 Sample variant view shows miss/miss by @dennishendriksen in #212

Full Changelog: v3.1.1...v3.1.2

v3.1.1

Bug fixes

• fix #205 Sample variant view shows ref/ref by @dennishendriksen in #207
• fix #206 HGVS abbreviation by @dennishendriksen in #208
• fix #209 Report breaks when CSQ metadata but variant without CSQ value by @dennishendriksen in #210

Full Changelog: v3.1.0...v3.1.1

v3.1.0

New Features

• ClinVar review status (stars in tooltip)
• ClinVar hyperlinks based on variant identifier
• Replace incomplete penetrance column with gene indicator
• Bump vip-report-vcf and vip-report-api to support custom ClinVar annotations

Bug Fixes

• Exact gene hyperlink for EntrezGene genes

Full Changelog: v3.0.0...v3.1.0

v3.0.0

Breaking changes

• Requires vip-report v4.x due to new report data format

New Features

• New report template design (see details below)
• Reduced report template file size (allows you to fit more variants in your report)
• Reduced report data file size (allows you to fit more variants in your report)
• #56 Variant record filtering
• #41 Variant record search
• Variant record sort improvement: sort consequences on active sort
• VCF download of filtering/search results
• #37 Show all pedigree members instead of father/mother
• Show variant consequence path through decision tree
• #117 Base report title on data

Bug Fixes:

• Fixed multiple potential security vulnerability issues
• #73 Position sorting sorts chromosomes out of order
• #76 Use viewport width for determining shown columns in main table
• #110 Sorting in position column broken
• #111 Transpose CSQ table in record detail view
• #120 Store API in Vue prototype
• #131 Report states "cannot read GT of undefined" if GT is the only FORMAT field present
• #154 SNP details in genome browser not entirely visible on smaller screens
• #165 Issues with decision tree fit to screen
• #167 gnomAD_AF not showing in variant detail view
• #173 Decision tree text rendering issues
• #184 Error popup in case of empty gene field in consequence

Under the hood

• Changed software stack from Webpack, Vue, Vuex, BootstrapVue to Vite, SolidJS, Bulma
• Large reduction of number of dependencies
• Removed SonarCloud, validate code coverage in Travis

New report template design

• Home screen
• Samples screen
• Sample screen (will display pedigree in the future)
• Sample variants screen
• Sample variant screen with genome browser
• Sample variant consequence screen with decision tree path
• Variants screen
• Variant screen with genome browser
• Variant consequence screen with decision tree path

v3.0.0-beta2

v3.0.0 beta release

v3.0.0-beta

v3.0.0 beta release

v2.7.3

Feature

Support Multi bool nodes in decision tree visualisation

v2.7.2

Bug Fixes

• Fix #175 Low read depth and allelic imbalance indicators broken

v2.7.1

Bug Fixes

• Fix #171 Decision tree rendering: CATEGORICAL without default or missing

v2.7.0

New Features

• Mark genes associated with incomplete penetrance as such

Bug Fixes

• Upgrade igv.js to v2.10.4