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Various fixes and improvements, including XML support #136

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Various fixes and improvements, including XML support #136

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4fd04f4
Tests: make mongodb data directory customisable via MONGO_TEST_DATA_DIR
eug48 Mar 8, 2018
e4f1a9f
Fix for unmarshalling of contained resources (#116)
eug48 Mar 8, 2018
0828858
Implemented Gin's Render.WriteContentType method
eug48 Mar 8, 2018
74baa5d
Fix for unmarshalling of contained resources: removed obsolete comment
eug48 May 28, 2018
4c09d01
Set the Content-Type to "application/fhir+json; charset=utf-8"
eug48 Mar 8, 2018
e7c7d6d
Datetime: added support for year-month
eug48 May 24, 2018
b1bdb72
DateTime: added support for time only (but should go into separate type)
eug48 May 27, 2018
40efa12
mongo search: added file & line to OperationOutcomes for diagnostics
eug48 May 24, 2018
bfe63ce
Batch controller: fixed detection of temporary ids
eug48 May 24, 2018
5f2e1fb
Support for conditional create
eug48 May 27, 2018
81b17a6
Fix chained searches with modifiers
cmoesel Sep 26, 2016
0553875
Fixed testcase from previous commit
eug48 May 28, 2018
7f662ca
Support for XML encodings
eug48 May 29, 2018
a7c3c4a
Disabled console color as it's sometimes hard to read
eug48 May 30, 2018
1c72012
JSON parsing: do not ignore errors
eug48 May 31, 2018
e6fb667
XML conversion: fixed handling of decimal types
eug48 May 31, 2018
8297424
PR prep: set go package name to github.com/intervention-engine
eug48 May 31, 2018
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28 changes: 28 additions & 0 deletions fixtures/bundle-crucible-1-observation.json
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Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
{
"status": "final",
"meta": {
"tag": [
{
"system": "http://projectcrucible.org",
"code": "testdata"
}
]
},
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "8302-2"
}
]
},
"valueQuantity": {
"unit": "cm",
"system": "http://unitsofmeasure.org",
"value": 170
},
"subject": {
"reference": "urn:uuid:547448f0-3292-4c93-a1b9-c55c65a710c7"
},
"resourceType": "Observation"
}
141 changes: 141 additions & 0 deletions fixtures/bundle-crucible-1.json
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Original file line number Diff line number Diff line change
@@ -0,0 +1,141 @@
{
"resourceType": "Bundle",
"type": "transaction",
"entry": [
{
"resource": {
"resourceType": "Patient",
"name": [
{
"given": [
"Transaction"
],
"text": "Transaction Crucible",
"use": "official",
"family": "Crucible"
}
],
"identifier": [
{
"use": "official",
"system": "http://projectcrucible.org",
"value": "1527658235"
}
],
"meta": {
"tag": [
{
"system": "http://projectcrucible.org",
"code": "testdata"
}
]
}
},
"request": {
"method": "POST",
"url": "Patient"
},
"fullUrl": "urn:uuid:547448f0-3292-4c93-a1b9-c55c65a710c7"
},
{
"resource": {
"status": "final",
"meta": {
"tag": [
{
"system": "http://projectcrucible.org",
"code": "testdata"
}
]
},
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "8302-2"
}
]
},
"valueQuantity": {
"unit": "cm",
"system": "http://unitsofmeasure.org",
"value": 170
},
"subject": {
"reference": "urn:uuid:547448f0-3292-4c93-a1b9-c55c65a710c7"
},
"resourceType": "Observation"
},
"request": {
"method": "POST",
"url": "Observation"
},
"fullUrl": "urn:uuid:1e7132a0-57e7-4f36-9e5c-d170ac73be88"
},
{
"resource": {
"status": "final",
"meta": {
"tag": [
{
"system": "http://projectcrucible.org",
"code": "testdata"
}
]
},
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "3141-9"
}
]
},
"valueQuantity": {
"unit": "kg",
"system": "http://unitsofmeasure.org",
"value": 200
},
"subject": {
"reference": "urn:uuid:547448f0-3292-4c93-a1b9-c55c65a710c7"
},
"resourceType": "Observation"
},
"request": {
"method": "POST",
"url": "Observation"
},
"fullUrl": "urn:uuid:3ab925ed-01b7-423c-817d-ea6622717cc3"
},
{
"resource": {
"verificationStatus": "confirmed",
"meta": {
"tag": [
{
"system": "http://projectcrucible.org",
"code": "testdata"
}
]
},
"code": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "414915002"
}
]
},
"subject": {
"reference": "urn:uuid:547448f0-3292-4c93-a1b9-c55c65a710c7"
},
"resourceType": "Condition"
},
"request": {
"method": "POST",
"url": "Condition"
},
"fullUrl": "urn:uuid:10c4484a-f74a-4477-ae29-6448cd7b88e4"
}
]
}
124 changes: 124 additions & 0 deletions fixtures/bundle-crucible-1.xml
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Original file line number Diff line number Diff line change
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<?xml version="1.0" encoding="utf-8"?>
<Bundle xmlns="http://hl7.org/fhir">
<type value="transaction"/>
<entry>
<fullUrl value="urn:uuid:547448f0-3292-4c93-a1b9-c55c65a710c7"/>
<resource>
<Patient>
<meta>
<tag>
<system value="http://projectcrucible.org"/>
<code value="testdata"/>
</tag>
</meta>
<identifier>
<use value="official"/>
<system value="http://projectcrucible.org"/>
<value value="1527658235"/>
</identifier>
<name>
<use value="official"/>
<text value="Transaction Crucible"/>
<family value="Crucible"/>
<given value="Transaction"/>
</name>
</Patient>
</resource>
<request>
<method value="POST"/>
<url value="Patient"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:1e7132a0-57e7-4f36-9e5c-d170ac73be88"/>
<resource>
<Observation>
<meta>
<tag>
<system value="http://projectcrucible.org"/>
<code value="testdata"/>
</tag>
</meta>
<status value="final"/>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="8302-2"/>
</coding>
</code>
<subject>
<reference value="urn:uuid:547448f0-3292-4c93-a1b9-c55c65a710c7"/>
</subject>
<valueQuantity>
<value value="170"/>
<unit value="cm"/>
<system value="http://unitsofmeasure.org"/>
</valueQuantity>
</Observation>
</resource>
<request>
<method value="POST"/>
<url value="Observation"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:3ab925ed-01b7-423c-817d-ea6622717cc3"/>
<resource>
<Observation>
<meta>
<tag>
<system value="http://projectcrucible.org"/>
<code value="testdata"/>
</tag>
</meta>
<status value="final"/>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="3141-9"/>
</coding>
</code>
<subject>
<reference value="urn:uuid:547448f0-3292-4c93-a1b9-c55c65a710c7"/>
</subject>
<valueQuantity>
<value value="200"/>
<unit value="kg"/>
<system value="http://unitsofmeasure.org"/>
</valueQuantity>
</Observation>
</resource>
<request>
<method value="POST"/>
<url value="Observation"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:10c4484a-f74a-4477-ae29-6448cd7b88e4"/>
<resource>
<Condition>
<meta>
<tag>
<system value="http://projectcrucible.org"/>
<code value="testdata"/>
</tag>
</meta>
<verificationStatus value="confirmed"/>
<code>
<coding>
<system value="http://snomed.info/sct"/>
<code value="414915002"/>
</coding>
</code>
<subject>
<reference value="urn:uuid:547448f0-3292-4c93-a1b9-c55c65a710c7"/>
</subject>
</Condition>
</resource>
<request>
<method value="POST"/>
<url value="Condition"/>
</request>
</entry>
</Bundle>
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