qiime1

Docker container with Anaconda, qiime, R, Java, RDP Classifier, ChimeraSlayer, Mothur, Muscle, rtax, and Swarm.

It's a beast of a Docker container.

Usage

To start an interactive session, first start a bash shell into the container.

docker pull mbari/qiime1
docker run --name qiime1 -v /Path/to/data:/mnt/data -i -t mbari/qiime1 /bash/bin

Once inside the container you just need to run:

source activate qiime1

# Your data will be in /mnt/data if you used the docker run command above