Docker container with Anaconda, qiime, R, Java, RDP Classifier, ChimeraSlayer, Mothur, Muscle, rtax, and Swarm.
It's a beast of a Docker container.
To start an interactive session, first start a bash shell into the container.
docker pull mbari/qiime1
docker run --name qiime1 -v /Path/to/data:/mnt/data -i -t mbari/qiime1 /bash/bin
Once inside the container you just need to run:
source activate qiime1
# Your data will be in /mnt/data if you used the docker run command above