Update branch #70
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Update branch #70
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update dev
create test for bed file
add minimal testing data output files to check processes
and the main workflow
generate test freebayes
update to version 0.2.1
update lofreq snapshot
update snapshot
add test data create snapshot
add additional testing data with more reads
setup functionality of nf-test
adapt docker tag
- increaed memory per process: Caused stalling of pipeline with only 1GB - Changed input channels to values for "raw", "conensus" and "final" - Updated snapshots accordingly
Update to newest release
bam.bai md5 is fine, but bam md5 differs from local machine and github CI
- adapt column names - filter for params.min_variant_level - Reduce number of columns (Sample, Pos, Reference, Variant, Variant-level)
add parser of mutserve output
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update mutserve_parser to the latest version before testing