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Nf test #69

Merged
merged 77 commits into from
Jun 20, 2024
Merged

Nf test #69

merged 77 commits into from
Jun 20, 2024

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AmstlerStephan
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Implement basic testing functionality with nf-test.

AmstlerStephan and others added 28 commits March 11, 2024 15:08
update lofreq snapshot
add test data
create snapshot
add additional testing data with more reads
setup functionality of nf-test
adapt docker tag
- increaed memory per process: Caused stalling of pipeline with only 1GB
- Changed input channels to values for "raw", "conensus" and "final"
- Updated snapshots accordingly
Update to newest release
bam.bai md5 is fine, but bam md5 differs from local machine and github CI
@AmstlerStephan AmstlerStephan merged commit 84c8f96 into dev Jun 20, 2024
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@AmstlerStephan AmstlerStephan deleted the nf-test branch June 20, 2024 10:55
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