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Add excluded samples file and update data
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seppinho committed Dec 20, 2023
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Showing 5 changed files with 83 additions and 87 deletions.
6 changes: 6 additions & 0 deletions tests/data/report/excluded_samples.txt
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HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam
7 changes: 1 addition & 6 deletions tests/data/report/haplocheck.txt
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"Sample" "Contamination Status" "Contamination Level" "Distance" "Sample Coverage"
"HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt.bam" "NO" "ND" "0" "117"
"HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam" "ND" "ND" "0" "29"
"HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam" "NO" "ND" "0" "42"
"HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam" "NO" "ND" "0" "44"
"HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam" "NO" "ND" "0" "44"
"HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt.bam" "NO" "ND" "0" "50"
"HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt.bam" "NO" "ND" "0" "104"
"HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam" "NO" "ND" "0" "48"
"NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam" "NO" "ND" "0" "56"
"NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam" "NO" "ND" "0" "81"
"NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam" "NO" "ND" "0" "81"
5 changes: 0 additions & 5 deletions tests/data/report/haplogroups.txt
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"SampleID" "Haplogroup" "Rank" "Quality" "Range" "Not_Found_Polys" "Found_Polys" "Remaining_Polys" "AAC_In_Remainings" "Input_Sample"
"HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt.bam" "H1a2" "1" "0.9533" "1-16569" "" "73G 263G 750G 1438G 3010A 4769G 8271T 8860G 15326G 16162G" "1187C (localPrivateMutation) 16519C (hotspot)" "" "73G 263G 750G 1187C 1438G 3010A 4769G 8271T 8860G 15326G 16162G 16519C"
"HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam" "H3g1b" "1" "1.0000" "1-16569" "" "152C 263G 750G 1438G 3992T 4418C 4769G 6776C 8860G 8950A 10754C 15326G" "16519C (hotspot)" "" "152C 263G 750G 1438G 3992T 4418C 4769G 6776C 8860G 8950A 10754C 15326G 16519C"
"HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam" "U5b1b2" "1" "0.9890" "1-16569" "573.XC" "73G 150T 217C 263G 750G 1438G 2706G 3197C 4769G 5656G 7028T 7768G 8860G 9477A 11467G 11719A 12308G 12372A 12618A 13617C 14182C 14766T 15326G 16189C 16192T 16270T" "6068T (globalPrivateMutation)" "" "73G 150T 217C 263G 750G 1438G 2706G 3197C 4769G 5656G 6068T 7028T 7768G 8860G 9477A 11467G 11719A 12308G 12372A 12618A 13617C 14182C 14766T 15326G 16189C 16192T 16270T"
"HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam" "A2k1a" "1" "1.0000" "1-16569" "" "64T 73G 146C 152C! 153G 235G 263G 663G 750G 1438G 1736G 2706G 3202C 4248C 4769G 4824G 7028T 8027A 8460G 8794T 8860G 11719A 12007A 12705T 14766T 15326G 15924G 16111T 16223T 16290T 16319A 16362C" "" "" "64T 73G 146C 153G 235G 263G 663G 750G 1438G 1736G 2706G 3202C 4248C 4769G 4824G 7028T 8027A 8460G 8794T 8860G 11719A 12007A 12705T 14766T 15326G 15924G 16111T 16223T 16290T 16319A 16362C"
"HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam" "A2w" "1" "0.9850" "1-16569" "" "64T 73G 146C 152C! 153G 235G 263G 663G 750G 1438G 1736G 2706G 4248C 4769G 4824G 7028T 7124G 8027A 8794T 8860G 11016A 11719A 12007A 12705T 14766T 15326G 16111T 16223T 16290T 16319A 16362C" "515d (globalPrivateMutation) 6286C (globalPrivateMutation) 9098C (localPrivateMutation)" "6286C [V128A| Codon 2 | COX1 ] 9098C [I191T| Codon 2 | ATP6 ]" "64T 73G 146C 153G 235G 263G 515d 663G 750G 1438G 1736G 2706G 4248C 4769G 4824G 6286C 7028T 7124G 8027A 8794T 8860G 9098C 11016A 11719A 12007A 12705T 14766T 15326G 16111T 16223T 16290T 16319A 16362C"
"HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt.bam" "M7b1a1d1" "1" "1.0000" "1-16569" "" "73G 150T 199C 263G 489C 750G 980C 1438G 2706G 4048A 4071T 4164G 4769G 5351G 5460A 6125G 6455T 6680C 7028T 7684C 7853A 8701G 8860G 9540C 9824C 10398G 10400T 10873C 11719A 12405T 12705T 12811C 14766T 14783C 15043A 15301A 15326G 16129A 16192T 16223T 16297C" "3107d (hotspot) 16519C (hotspot)" "" "73G 150T 199C 263G 489C 750G 980C 1438G 2706G 3107d 4048A 4071T 4164G 4769G 5351G 5460A 6125G 6455T 6680C 7028T 7684C 7853A 8701G 8860G 9540C 9824C 10398G 10400T 10873C 11719A 12405T 12705T 12811C 14766T 14783C 15043A 15301A 15326G 16129A 16192T 16223T 16297C 16519C"
"HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt.bam" "H1" "1" "0.8153" "1-16569" "" "263G 750G 1438G 3010A 4769G 8860G 15326G" "214G (localPrivateMutation) 4491A (localPrivateMutation) 7076G (localPrivateMutation) 7859A (localPrivateMutation) 10007C (localPrivateMutation) 16172C (localPrivateMutation) 16519C (hotspot)" "4491A [V8I| Codon 1 | ND2 ] 7859A [D92N| Codon 1 | COX2 ]" "214G 263G 750G 1438G 3010A 4491A 4769G 7076G 7859A 8860G 10007C 15326G 16172C 16519C"
"HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam" "L2b1a2" "1" "0.9516" "1-16569" "204C 4158G 7521A 8860G" "73G 146C! 150T 152C 182T 195C 198T 263G 418T 750G 769A 1018A 1438G 1442A 1706T 2332T 2358G 2416C 2706G 3594T 4104G 4370C 4767G 4769G 5027T 5331A 5814C 6026A 6713T 7028T 7256T 7569G 7624A 8080T 8206A 8387A 8701G 9221G 9540C 10115C 10398G 10828C 10873C 11719A 11944C 12236A 12705T 12948G 13590A 13650T 13924T 14059G 14766T 15110A 15217A 15301A 15326G 16114A 16129A 16213A 16223T 16278T 16311C! 16355T 16362C 16390A" "4959A (localPrivateMutation) 11002G (localPrivateMutation) 11734G (localPrivateMutation)" "4959A [A164T| Codon 1 | ND2 ]" "73G 150T 152C 182T 195C 198T 263G 418T 750G 769A 1018A 1438G 1442A 1706T 2332T 2358G 2416C 2706G 3594T 4104G 4370C 4767G 4769G 4959A 5027T 5331A 5814C 6026A 6713T 7028T 7256T 7569G 7624A 8080T 8206A 8387A 8701G 9221G 9540C 10115C 10398G 10828C 10873C 11002G 11719A 11734G 11944C 12236A 12705T 12948G 13590A 13650T 13924T 14059G 14766T 15110A 15217A 15301A 15326G 16114A 16129A 16213A 16223T 16278T 16355T 16362C 16390A"
"NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam" "M9a1a1a" "1" "0.9932" "1-16569" "" "73G 153G! 263G 489C 750G 1041G 1438G 2706G 3394C 4491A 4769G 7028T 8701G 8860G 9242G 9540C 10398G 10400T 10873C 11719A 11963A 12705T 14308C 14766T 14783C 15043A 15301A 15326G 16223T 16234T 16316G 16362C" "11914A (localPrivateMutation)" "" "73G 263G 489C 750G 1041G 1438G 2706G 3394C 4491A 4769G 7028T 8701G 8860G 9242G 9540C 10398G 10400T 10873C 11719A 11914A 11963A 12705T 14308C 14766T 14783C 15043A 15301A 15326G 16223T 16234T 16316G 16362C"
"NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam" "L4b2a2c*" "1" "0.9892" "1-16569" "3435T" "73G 146C 195C! 244G 263G 391C 709A! 750G 769A 1018A 1413C 1438G 1694C 2706G 3918A 4021G 4769G 4949G 5460A! 6260A 7028T 7455G 8071C 8104C 8119C 8248G 8478T 8701G 8860G 9540C 9855G 10398G 10532G 10783C 10873C 11719A 12609C 12705T 13470G 14766T 15301A 15326G 15454C 16172C 16223T 16293T 16311C 16355T 16362C 16399G" "16519C (hotspot)" "" "73G 146C 244G 263G 391C 750G 769A 1018A 1413C 1438G 1694C 2706G 3918A 4021G 4769G 4949G 6260A 7028T 7455G 8071C 8104C 8119C 8248G 8478T 8701G 8860G 9540C 9855G 10398G 10532G 10783C 10873C 11719A 12609C 12705T 13470G 14766T 15301A 15326G 15454C 16172C 16223T 16293T 16311C 16355T 16362C 16399G 16519C"
12 changes: 6 additions & 6 deletions tests/data/report/sample_mappings.txt
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Sample Filename
HG01060 HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam
HG00285 HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam
HG03046 HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam
HG00245 HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam
NA19435 NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam
HG00180 HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt.bam
NA18593 NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam
HG03046 HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam
HG01354 HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam
NA19435 NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam
HG01060 HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam
HG00285 HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam
HG02236 HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt.bam
HG00245 HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam
HG01817 HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt.bam
NA18593 NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam
140 changes: 70 additions & 70 deletions tests/data/report/sample_statistics.txt
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Sample Parameter Value
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt Contig MT
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt NumberofReads 10332
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt CoveredBases 16568
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt CoveragePercentage 99.994
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt MeanDepth 47.7713
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt MeanBaseQuality 31.3
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt MeanMapQuality 49.2
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt Contig MT
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt NumberofReads 10295
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt CoveredBases 16566
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt CoveragePercentage 99.9819
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt MeanDepth 49.1433
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt MeanBaseQuality 30.5
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt MeanMapQuality 44.9
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt Contig MT
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt NumberofReads 11148
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt CoveredBases 16554
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt CoveragePercentage 99.9095
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt MeanDepth 49.4645
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt MeanBaseQuality 34.2
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt MeanMapQuality 48.8
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt Contig MT
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt NumberofReads 9573
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt CoveredBases 16568
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt CoveragePercentage 99.994
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt MeanDepth 55.8625
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt MeanBaseQuality 37.2
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt MeanMapQuality 53.6
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt Contig MT
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt NumberofReads 11132
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt CoveredBases 16569
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt CoveragePercentage 100
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt MeanDepth 57.6896
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt MeanBaseQuality 32.5
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt MeanMapQuality 48.6
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt Contig MT
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt NumberofReads 10185
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt CoveredBases 16566
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt CoveragePercentage 99.9819
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt MeanDepth 49.0256
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt MeanBaseQuality 30.5
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt MeanMapQuality 45.5
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt Contig MT
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt NumberofReads 10435
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt CoveredBases 16564
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt CoveragePercentage 99.9698
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt MeanDepth 62.574
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt MeanBaseQuality 38.2
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt MeanMapQuality 54.1
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt Contig MT
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt NumberofReads 9549
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt CoveredBases 16567
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt CoveragePercentage 99.9879
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt MeanDepth 56.716
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt MeanBaseQuality 37.5
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt MeanMapQuality 53.7
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt Contig MT
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt NumberofReads 9782
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt CoveredBases 16568
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt CoveragePercentage 99.994
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt MeanDepth 42.9175
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt MeanBaseQuality 35.2
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt MeanMapQuality 49.5
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt Contig MT
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt NumberofReads 10951
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt CoveredBases 16569
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt CoveragePercentage 100
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt MeanDepth 56.9861
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt MeanBaseQuality 31.7
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt MeanMapQuality 49.6
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam Contig MT
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam NumberofReads 9782
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam CoveredBases 16568
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam CoveragePercentage 99.994
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam MeanDepth 42.9175
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam MeanBaseQuality 35.2
HG00245.mapped.ILLUMINA.bwa.GBR.exome.20121211.bam.mt.bam MeanMapQuality 49.5
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam Contig MT
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam NumberofReads 10435
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam CoveredBases 16564
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam CoveragePercentage 99.9698
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam MeanDepth 62.574
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam MeanBaseQuality 38.2
NA19435.mapped.ILLUMINA.bwa.LWK.exome.20130415.bam.mt.bam MeanMapQuality 54.1
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt.bam Contig MT
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt.bam NumberofReads 9573
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt.bam CoveredBases 16568
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt.bam CoveragePercentage 99.994
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt.bam MeanDepth 55.8625
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt.bam MeanBaseQuality 37.2
HG00180.mapped.ILLUMINA.bwa.FIN.exome.20130415.bam.mt.bam MeanMapQuality 53.6
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam Contig MT
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam NumberofReads 11148
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam CoveredBases 16554
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam CoveragePercentage 99.9095
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam MeanDepth 49.4645
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam MeanBaseQuality 34.2
HG03046.mapped.ILLUMINA.bwa.GWD.exome.20121211.bam.mt.bam MeanMapQuality 48.8
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam Contig MT
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam NumberofReads 10185
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam CoveredBases 16566
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam CoveragePercentage 99.9819
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam MeanDepth 49.0256
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam MeanBaseQuality 30.5
HG01354.mapped.ILLUMINA.bwa.CLM.exome.20120522.bam.mt.bam MeanMapQuality 45.5
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam Contig MT
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam NumberofReads 10332
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam CoveredBases 16568
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam CoveragePercentage 99.994
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam MeanDepth 47.7713
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam MeanBaseQuality 31.3
HG01060.mapped.ILLUMINA.bwa.PUR.exome.20120522.bam.mt.bam MeanMapQuality 49.2
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam Contig MT
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam NumberofReads 10295
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam CoveredBases 16566
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam CoveragePercentage 99.9819
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam MeanDepth 49.1433
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam MeanBaseQuality 30.5
HG00285.mapped.ILLUMINA.bwa.FIN.exome.20120522.bam.mt.bam MeanMapQuality 44.9
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt.bam Contig MT
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt.bam NumberofReads 9549
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt.bam CoveredBases 16567
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt.bam CoveragePercentage 99.9879
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt.bam MeanDepth 56.716
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt.bam MeanBaseQuality 37.5
HG02236.mapped.ILLUMINA.bwa.IBS.exome.20130415.bam.mt.bam MeanMapQuality 53.7
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt.bam Contig MT
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt.bam NumberofReads 10951
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt.bam CoveredBases 16569
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt.bam CoveragePercentage 100
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt.bam MeanDepth 56.9861
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt.bam MeanBaseQuality 31.7
HG01817.mapped.ILLUMINA.bwa.CDX.exome.20120522.bam.mt.bam MeanMapQuality 49.6
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam Contig MT
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam NumberofReads 11132
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam CoveredBases 16569
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam CoveragePercentage 100
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam MeanDepth 57.6896
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam MeanBaseQuality 32.5
NA18593.mapped.ILLUMINA.bwa.CHB.exome.20121211.bam.mt.bam MeanMapQuality 48.6

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