Test out uv lockfile

.github/workflows/benchmark.yml

@@ -13,7 +13,7 @@ permissions:
 env:
   ERT_SHOW_BACKTRACE: 1
   ECL_SKIP_SIGNAL: 1
-  UV_SYSTEM_PYTHON: 1
+  UV_FROZEN: true
 
 jobs:
   benchmark:
@@ -35,14 +35,17 @@ jobs:
 
       - name: Install uv
         uses: astral-sh/setup-uv@v4
+        with:
+          enable-cache: true
+          python-version: "3.11"
 
       - name: Install ert with dev-deps
         run: |
-          uv pip install ".[dev]"
+          uv sync --group dev
 
       - name: Run benchmark
         run: |
-          pytest tests/ert/performance_tests/test_analysis.py::test_and_benchmark_adaptive_localization_with_fields --benchmark-json output.json
+          uv run pytest tests/ert/performance_tests/test_analysis.py::test_and_benchmark_adaptive_localization_with_fields --benchmark-json output.json
 
       - name: Store benchmark result
         uses: benchmark-action/github-action-benchmark@v1

.github/workflows/build_and_test.yml

@@ -11,7 +11,7 @@ on:
 env:
   ERT_SHOW_BACKTRACE: 1
   ECL_SKIP_SIGNAL: 1
-  UV_SYSTEM_PYTHON: 1
+  UV_FROZEN: true
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
@@ -166,10 +166,13 @@ jobs:
 
     - name: Install uv
       uses: astral-sh/setup-uv@v4
+      with:
+        enable-cache: true
+        python-version: ${{ matrix.python-version }}
 
     - name: Install ert
       run: |
-        uv pip install ".[dev, everest]"
+        uv sync --extra everest --group dev
 
     - name: Make test directory
       run: |
@@ -180,7 +183,7 @@ jobs:
 
     - name: Test docs
       run: |
-        sphinx-build -n -v -E -W ./docs/ert ./tmp/ert_docs
+        uv run sphinx-build -n -v -E -W ./docs/ert ./tmp/ert_docs
 
   publish:
     name: Publish to PyPI

.github/workflows/codspeed.yml

@@ -8,7 +8,7 @@ on:
   workflow_dispatch:
 
 env:
-  UV_SYSTEM_PYTHON: 1
+  UV_FROZEN: true
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
@@ -25,12 +25,15 @@ jobs:
           python-version: '3.12'
       - name: Install uv
         uses: astral-sh/setup-uv@v4
+        with:
+          enable-cache: true
+          python-version: '3.12'
       - run: |
-          uv pip install ".[dev, everest]"
+          uv sync --extra everest --group dev
           uv pip uninstall pytest-benchmark
           uv pip install pytest-codspeed
       - uses: CodSpeedHQ/action@v3
         with:
           token: ${{ secrets.CODSPEED_TOKEN }}
           run: |
-            pytest tests/ert/performance_tests --codspeed --timeout=1200
+            uv run pytest tests/ert/performance_tests --codspeed --timeout=1200

.github/workflows/run_ert_test_data_setups.yml

@@ -13,7 +13,7 @@ concurrency:
 
 env:
   ERT_SHOW_BACKTRACE: 1
-  UV_SYSTEM_PYTHON: 1
+  UV_FROZEN: true
 
 jobs:
   run-ert-test-data:
@@ -44,26 +44,29 @@ jobs:
 
     - name: Install uv
       uses: astral-sh/setup-uv@v4
+      with:
+        enable-cache: true
+        python-version: ${{ matrix.python-version }}
 
     - name: Install ERT and dependencies
       run: |
-        uv pip install .
+        uv sync
 
     - name: Test poly example
       run: |
         pushd test-data/ert/poly_example
-        ert test_run poly.ert
+        uv run ert test_run poly.ert
         popd
 
     - name: Test snake_oil
       run: |
         pushd test-data/ert/snake_oil
         uv pip install oil_reservoir_synthesizer resdata
-        ert test_run snake_oil.ert
+        uv run ert test_run snake_oil.ert
         popd
 
     - name: Test snake_oil_field
       run: |
         pushd test-data/ert/snake_oil_field
-        ert test_run snake_oil.ert
+        uv run ert test_run snake_oil.ert
         popd

.github/workflows/style.yml

@@ -8,7 +8,7 @@ on:
  pull_request:
 
 env:
-  UV_SYSTEM_PYTHON: 1
+  UV_FROZEN: true
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
@@ -34,12 +34,15 @@ jobs:
 
     - name: Install uv
       uses: astral-sh/setup-uv@v4
+      with:
+        enable-cache: true
+        python-version: ${{ matrix.python-version }}
 
     - name: Install ERT with style dependencies
       run: |
-        uv pip install ".[style]"
+        uv sync --group style
 
     - name: Run style check
       if: ${{ always() }}
       run: |
-        SKIP=no-commit-to-branch pre-commit run --all-files --show-diff-on-failure
+        SKIP=no-commit-to-branch uv run pre-commit run --all-files --show-diff-on-failure

.github/workflows/test_ert.yml

@@ -11,7 +11,7 @@ on:
 env:
   ERT_SHOW_BACKTRACE: 1
   ECL_SKIP_SIGNAL: 1
-  UV_SYSTEM_PYTHON: 1
+  UV_FROZEN: true
 
 jobs:
   tests-ert:
@@ -32,15 +32,18 @@ jobs:
 
     - name: Install uv
       uses: astral-sh/setup-uv@v4
+      with:
+        enable-cache: true
+        python-version: ${{ inputs.python-version }}
 
     - name: Install ert
       run: |
-        uv pip install ".[dev, everest]"
+        uv sync --extra everest --group dev
 
     - name: GUI Test
       if: inputs.test-type == 'gui-tests'
       run: |
-        pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --mpl --benchmark-disable tests/ert/ui_tests/gui --durations=25
+        uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --mpl --benchmark-disable tests/ert/ui_tests/gui --durations=25
 
     - name: Upload artifact images
       uses: actions/upload-artifact@v4
@@ -53,18 +56,18 @@ jobs:
     - name: CLI Test
       if: inputs.test-type == 'cli-tests'
       run: |
-        pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --benchmark-disable  --dist loadgroup tests/ert/ui_tests/cli --durations=25
+        uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -v --benchmark-disable  --dist loadgroup tests/ert/ui_tests/cli --durations=25
 
     - name: Unit Test
       if: inputs.test-type == 'unit-tests'
       run: |
-        pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable --mpl --dist loadgroup tests/ert/unit_tests --durations=25
-        pytest --doctest-modules --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov2.xml src/ --ignore src/ert/dark_storage
+        uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable --mpl --dist loadgroup tests/ert/unit_tests --durations=25
+        uv run pytest --doctest-modules --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov2.xml src/ --ignore src/ert/dark_storage
 
     - name: Performance Test
       if: inputs.test-type == 'performance-tests'
       run: |
-        pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable  --dist loadgroup tests/ert/performance_tests --durations=25
+        uv run pytest --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -n logical --show-capture=stderr -v --benchmark-disable  --dist loadgroup tests/ert/performance_tests --durations=25
 
     - name: Upload coverage to Codecov
       id: codecov1
@@ -102,13 +105,16 @@ jobs:
 
     - name: Test CLI
       run: |
-        ert --help
+        uv run ert --help
 
     - name: Test for a clean repository
       run: |
         # Remove things we have generated on purpose:
+        ls -la
         rm -rf .coverage
         rm -f coverage.xml cov1.xml cov2.xml junit.xml
         rm -f ert.*.whl
+        rm -f .coverage.*
+        ls -la
         git status --porcelain
         test -z "$(git status --porcelain)"

.github/workflows/test_ert_with_slurm.yml

@@ -7,7 +7,7 @@ on:
         type: string
 
 env:
-  UV_SYSTEM_PYTHON: 1
+  UV_FROZEN: true
 
 jobs:
   test-ert-on-slurm:
@@ -25,10 +25,13 @@ jobs:
 
     - name: Install uv
       uses: astral-sh/setup-uv@v4
+      with:
+        enable-cache: true
+        python-version: ${{ inputs.python-version }}
 
     - name: Install ert
       run: |
-        uv pip install ".[dev]"
+        uv sync --group dev
 
     - name: Install and setup slurm
       run: |
@@ -69,8 +72,8 @@ jobs:
       run: |
         set -e
         export _ERT_TESTS_ALTERNATIVE_QUEUE=AlternativeQ
-        pytest tests/ert/unit_tests/scheduler --slurm
-        pytest tests/ert/ui_tests/cli/test_missing_runpath.py --slurm
+        uv run pytest tests/ert/unit_tests/scheduler --slurm
+        uv run pytest tests/ert/ui_tests/cli/test_missing_runpath.py --slurm
 
     - name: Test poly-example on slurm
       run: |
@@ -84,4 +87,4 @@ jobs:
         QUEUE_SYSTEM SLURM
         EOF
 
-        time ert ensemble_experiment poly.ert
+        time uv run ert ensemble_experiment poly.ert

.github/workflows/test_everest.yml

@@ -12,7 +12,7 @@ on:
 
 env:
   NO_PROJECT_RES: 1
-  UV_SYSTEM_PYTHON: 1
+  UV_FROZEN: true
 
 jobs:
   tests-everest:
@@ -32,48 +32,51 @@ jobs:
 
     - name: Install uv
       uses: astral-sh/setup-uv@v4
+      with:
+        enable-cache: true
+        python-version: ${{ inputs.python-version }}
 
     - name: Install Everest and dependencies
       run: |
-        uv pip install ".[dev,everest]"
+        uv sync --extra everest --group dev
 
     - name: Run Tests Linux
       if: ${{ inputs.test-type == 'test' && runner.os != 'macOS'}}
       run: |
-        pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test" --dist loadgroup -sv
+        uv run pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test" --dist loadgroup -sv
 
     - name: Run Tests macOS
       if: ${{ inputs.test-type == 'test' && runner.os == 'macOS'}}
       run: |
-        python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test and not fails_on_macos_github_workflow" --dist loadgroup -sv
+        uv run python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "not integration_test and not fails_on_macos_github_workflow" --dist loadgroup -sv
 
     - name: Run Integration Tests Linux
       if: ${{inputs.test-type == 'integration-test' && runner.os != 'macOS'}}
       run: |
-        pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test" --dist loadgroup -sv
+        uv run pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test" --dist loadgroup -sv
 
     - name: Run Integration Tests macOS
       if: ${{inputs.test-type == 'integration-test' && runner.os == 'macOS'}}
       run: |
-        python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test and not fails_on_macos_github_workflow" --dist loadgroup
+        uv run python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m "integration_test and not fails_on_macos_github_workflow" --dist loadgroup
 
     - name: Build Documentation
       if: inputs.test-type == 'doc'
       run: |
         uv pip install git+https://github.com/equinor/everest-models.git
         mkdir tmp
-        sphinx-build -n -v -E -W ./docs/everest ./tmp/everest_docs
+        uv run sphinx-build -n -v -E -W ./docs/everest ./tmp/everest_docs
 
     - name: Run tests requiring everest-models
       if: inputs.test-type == 'everest-models-test'
       run: |
         uv pip install git+https://github.com/equinor/everest-models.git
-        python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m everest_models_test --dist loadgroup
+        uv run python -m pytest tests/everest -n 4 --cov=ert --cov=everest --cov=_ert --cov-report=xml:cov1.xml --junit-xml=junit.xml -o junit_family=legacy -m everest_models_test --dist loadgroup
 
     - name: Test docs entry point
       if: inputs.test-type == 'everest-docs-entry-test'
       run: |
-        python -m everest.docs
+        uv run python -m everest.docs
 
     - name: Upload coverage to Codecov
       if: inputs.test-type != 'everest-docs-entry-test' && inputs.test-type != 'doc'

.github/workflows/test_semeio.yml

@@ -8,7 +8,7 @@ name: Test Semeio
 on: [pull_request]
 
 env:
-  UV_SYSTEM_PYTHON: 1
+  UV_FROZEN: true
 
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
@@ -35,10 +35,13 @@ jobs:
 
     - name: Install uv
       uses: astral-sh/setup-uv@v4
+      with:
+        enable-cache: true
+        python-version: ${{ matrix.python-version }}
 
     - name: Install ert
       run: |
-        uv pip install .
+        uv sync
 
     - name: Get semeio
       run: |
@@ -47,5 +50,5 @@ jobs:
     - name: Test semeio
       run: |
         pushd semeio
-        uv pip install ".[test]"
-        pytest
+        VIRTUAL_ENV=../.venv uv pip install ".[test]"
+        UV_PROJECT_ENVIRONMENT=../.venv uv run --no-sync pytest