Code

Upgrade to Python 3.11#754

Code

Merged

dmichaels-harvard merged 27 commits intomasterdbmi-bgm/cgap-portal:masterfrom upgrade-python-20230925dbmi-bgm/cgap-portal:upgrade-python-20230925Copy head branch name to clipboardOct 10, 2023

+638-939

Commits

Commits on Sep 26, 2023

• j

  dmichaels-harvard

  committed
  ec081f6

• Comments in CHANGELOG.rst

  dmichaels-harvard

  committed
  f215817

• Changed import of Mapping from collections to collections.abc

  dmichaels-harvard

  committed
  0f5dc2e

• Typo!

  dmichaels-harvard

  committed
  7dbf212

• Update snovault version

  dmichaels-harvard

  committed
  e5f396d

• update version

  dmichaels-harvard

  committed
  9f26298

• TEMPORARILY putting access_key.py/json back to debug GA failure.

  dmichaels-harvard

  committed
  27f5a78

Commits on Sep 27, 2023

• Update access_key.{json,py} back.

  dmichaels-harvard

  committed
  74db13e

• debug

  dmichaels-harvard

  committed
  a2ffd0f

• Remove 3.11 from .github/workflows/main.yml for testing/debugging purposes.

  dmichaels-harvard

  committed
  22db0bc

• Put 3.11 back into .github/workflows/main.yml but removed 3.8 so only one.

  dmichaels-harvard

  committed
  4024635

• Now put back both 3.8 and 3.11 in .github/workflows/main.yml

  dmichaels-harvard

  committed
  393bd25

• Again remove 3.8 from .github/workflows/main.yml so again there is only one.

  dmichaels-harvard

  committed
  3f2b191

• Added back both 3.8 and 3.11 in .github/workflows/main.yml and added wait_for_index in test_create_mapping.py.

  dmichaels-harvard

  committed
  1458193

• Backed out both 3.8 and 3.11 from .github/workflows/main.yml - just 3.1 now

  dmichaels-harvard

  committed
  c1320f4

Commits on Sep 28, 2023

• update versions: dcicutils, dcicsnovault

  dmichaels-harvard

  committed
  0236869

• update snovault version

  dmichaels-harvard

  committed
  8d1e9e2

• update versions: dcicsnovault

  dmichaels-harvard

  committed
  35f6670

• Updated Dockerfile with python:3.11.5-slim-bullseye and install_nginx_bullseye.sh

  dmichaels-harvard

  committed
  123251a

Commits on Sep 29, 2023

• Minro update to main.yml for GA

  dmichaels-harvard

  committed
  973b70d

• Removed Python 3.7 from list in pyproject.toml

  dmichaels-harvard

  committed
  0467c8b

Commits on Oct 4, 2023

• Update dcicpyvcf to use latest version (3.0.0a4).

  netsettler

  committed
  5931f51

Commits on Oct 5, 2023

• Use dcicpyvcf ^3.0.0

  netsettler

  committed
  6c4cd78

• Update snovault version

  dmichaels-harvard

  committed
  3580110

Commits on Oct 10, 2023

• Merge underlying branch upgrade-python-20230925 to take change in dcicsnovault in pyproject.toml, and then update poetry.lock to agree.

  netsettler

  committed
  0944ee6

• Merge pull request #756 from dbmi-bgm/kmp_dcicpyvcf_v3

  Show description for ccea5c0
  netsettler

  authored
  ccea5c0

• Update to 15.0.0; ready for merge to master.

  dmichaels-harvard

  committed
  af58b4b