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cfe-lab / MiCall Public

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Remove usage of biopython application#1209

Merged

Donaim merged 8 commits intomastercfe-lab/MiCall:masterfrom remove-usage-of-biopython-applicationcfe-lab/MiCall:remove-usage-of-biopython-applicationCopy head branch name to clipboard

Dec 7, 2024

+184-136

Conversation Commits8 (8)Checks Files changed

Commits

Commits on Dec 6, 2024

Replace Bio.Blast.Applications by subprocess
Donaim
committed
Complete removal of Bio.Blast.Applications
Donaim
committed

Commits on Dec 7, 2024

Fix type errors in externals.py
Donaim
committed
Enable typechecking for externals.py
Donaim
committed
Factor out blastn invocations into externals.py
Donaim
committed
Fully type externals.py and improve code quality
Donaim
committed
Make sure to validate version for every command in externals.py
Donaim
committed
Resolve executable paths in externals.py
Donaim
committed

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