Remove usage of biopython application #1209
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This solves the problem of using an obsolete API. The Bio.Blast.Applications module is obsolete in current versions of BioPython. It even prints an error. Solves #1107
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Also improve typing in externals.py and fasta_to_csv.py
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This solves the problem of using an obsolete API.
The Bio.Blast.Applications module is obsolete in current versions of
BioPython. It even prints an error.
Additionally, improve code quality around
externals.py.Solves #1107