Discussions

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  Metaclustergui in Colab?

  smith6jt-cop started Nov 5, 2024 in General

  

  

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  pixie pixel clustering that seperates background

  mezwick asked Jul 24, 2024 in Q&A · Unanswered

  

  

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  Changing Parameters EzSegmenter

  fratner1 asked Jul 1, 2024 in Q&A · Unanswered

  

  

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  Pixel Subset in Pixie

  question Further information is requested

  matthew-lee1 started Feb 27, 2024 in General

  

  

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  Processing of large images

  honzee started Aug 4, 2023 in General

  

  

  

  

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  Pixel clustering with Pixie - error

  bug Something isn't working

  Nitya20001 announced Nov 22, 2023 in Announcements

  

  

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  ConnectionResetError when using deepcell_service_utils.create_deepcell_output

  bug Something isn't working

  coding0lion announced Nov 28, 2023 in Announcements

  

  

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  2_Pixie_Cluster_Pixel.ipynb not creating pixel_meta_cluster_mapping.csv

  bug Something isn't working

  milesbailey121 announced Nov 23, 2023 in Announcements

  

  

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  "Commercial use" license inquiry

  question Further information is requested

  VictorDidier announced Aug 23, 2023 in Announcements

  

  

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  Issue with selecting SOM clusters/metaclusters in the pixel clustering notebook

  honzee started Aug 1, 2023 in General

  

  

  

  

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  marker_quantification.generate_cell_table taking long time to complete

  genomelab started Jun 19, 2023 in General

  

  

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  I downloaded the ark library, but the segmentation module is not there?

  mmhatmal started May 21, 2023 in General

  

  

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  output images larger the 512 x 512 come out of pixel clustering unrecognizable to original tiff image...

  jasonmadore asked May 8, 2023 in Q&A · Closed · Answered

  

  

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  ValueError: Cluster table must include column named "metacluster"

  c0urtneyt asked Feb 7, 2023 in Q&A · Unanswered

  

  

  

  

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  Seed invalid integer

  whitneyt1 asked Dec 6, 2022 in Q&A · Unanswered

  

  

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  Error in unserialize(socklist[[n]]) : error reading from connection Calls: %dopar% ... recvOneData -> recvOneData.SOCKcluster -> unserialize Execution halted

  whitneyt1 asked Oct 13, 2022 in Q&A · Answered

  

  

  

  

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  MemoryError: Process terminated: you likely have a memory-related error. Try increasing your Docker memory limit. only occurs when trying to run the pixel_cluster_utils.command

  whitneyt1 asked Sep 27, 2022 in Q&A · Answered

  

  

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  ValueError: Length mismatch: Expected 1050 rows, received array of length 2170 when trying to cluster cells

  whitneyt1 asked Sep 15, 2022 in Q&A · Answered

  

  

  

  

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  Ark Restructuring, Adding More Development Tools and Overhauls

  srivarra started Oct 5, 2022 in Ideas

  

  

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  Start thinking OOP for ark-analysis

  alex-l-kong started Sep 29, 2022 in Ideas

  

  

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  Improvements to Testing

  enhancement New feature or request

  srivarra started Sep 28, 2022 in Ideas

  

  

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  Converting .ome.tiff to single channel tiffs

  question Further information is requested

  jonhsussman asked Sep 19, 2022 in Q&A · Unanswered

  

  

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  File directory doesn't exist

  question Further information is requested

  iriszhang0 asked Sep 5, 2022 in Q&A · Unanswered

  

  

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  Image pre-processing

  veenstje asked Dec 2, 2021 in Q&A · Answered

  

  

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