Error in unserialize(socklist[[n]]) : error reading from connection Calls: %dopar% ... recvOneData -> recvOneData.SOCKcluster -> unserialize Execution halted #769
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Hello! I updated ark, received this error when "using pixel SOM weights to assign pixel clusters", redownloaded ark from scratch and still received this error. I have 11 400x400 FOVs across 5 run folders, which have been processed through toffy then run through the new ark package from the first segmentation notebook.
Please let me know what other information would be helpful to provide. Thank you! |
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Replies: 2 comments 1 reply
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Hey @whitneyt1, this is a problem with the parallel processing library we're using to speed up these calculations. This has been a huge headache to maintain, so we're going to get rid of it, see #771 for progress updates. |
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Thank you!!!
…On Thu, Oct 13, 2022 at 3:02 PM Noah F. Greenwald ***@***.***> wrote:
Hey @whitneyt1 <https://github.com/whitneyt1>, this is a problem with the
parallel processing library we're using to speed up these calculations.
This has been a huge headache to maintain, so we're going to get rid of it,
see #771 <#771> for
progress updates.
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@whitneyt1 we recently pushed a change that defaults the processing to single core. There are optional arguments that you can set to turn multiprocessing back on if desired. |
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Hey @whitneyt1, this is a problem with the parallel processing library we're using to speed up these calculations. This has been a huge headache to maintain, so we're going to get rid of it, see #771 for progress updates.