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Update figure for readme.md and update.md
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sophietheis committed Oct 7, 2024
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22 changes: 3 additions & 19 deletions INSTALL.md
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## System requirements
Linux, Windows and Mac OS are supported for running the code. At least 8 GB of RAM is required to run the software. 32GB may be required for larger images. The software has been heavily tested on Ubuntu 22.04 and less-tested on Mac OS and Windows 10. Please open an issue if you have any problems with installation.

:warning: conda and pip are not working yet. Please use installing from source method :heavy_exclamation_mark:
## Installing CellSeg with conda

If you have a conda environment ready:
```
conda install -c conda-forge CellSeg
```

This will install CellSeg and all its dependencies, with the pre-compiled binary parts.

## Install CellSeg using pip

This install a cross-platform, pure python version of CellSeg.
Some advanced features are not available, namely:

```sh
python -m pip install --user --upgrade CellSeg
pip install CellSegAnalysis
```

## Installing from source
Expand All @@ -38,19 +28,13 @@ git clone --recursive https://github.com/TimSaundersLab/CellSeg.git
cd CellSeg
```

Then create a virtual environement:
Then create a virtual environment:

```bash
conda env create -f environment.yml
conda create --name cellseg
```

Then install python:
```
python setup.py install
```

Or

```
pip install .
```
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