Update gene info processing for druggability revamp#163

Merged

beatrizsaldana merged 15 commits intodevfrom beatrizsaldana/AG-1564/ADT-Update-gene_info-processing-for-druggability-revamp

Dec 11, 2024

+243-252

Commits on Dec 2, 2024

Removed druggability dataset from gene_info provenance
Beatriz Saldana
committed
Updated gene_metadata syn25953363 version from 13 to 14
Beatriz Saldana
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Added pharos_classes file to config and test_config
Beatriz Saldana
committed

Commits on Dec 3, 2024

Updated gene_info transform to use pharos_classes dataset and only include pharos_class in druggability object
Beatriz Saldana
committed

Commits on Dec 4, 2024

Added pharos classes good input for testing
Beatriz Saldana
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Updated test outputs for gene_info to include pharos_class
Beatriz Saldana
committed
pytest passing
Beatriz Saldana
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Updated druggability json for gx validation and commented out the validation itself so I can run adt without problems and then update gx validation
Beatriz Saldana
committed

Commits on Dec 6, 2024

Got gx validation to work. Had to use mostly=0.5, not ideal
Beatriz Saldana
committed

Commits on Dec 10, 2024

Merged from dev
Beatriz Saldana
committed

Commits on Dec 11, 2024

Removed the mostly from the gene_info druggability json validation
Beatriz Saldana
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Added docstrings to gene_info tests to prevent issues with CI interrogate
Beatriz Saldana
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Sorted biodomains column so we stop seeing unnecessary changes in PRs
Beatriz Saldana
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pin ubuntu version
BWMac
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fixes pin
BWMac
committed