Update gene info processing for druggability revamp

[beatrizsaldana]

AG-863: Update gene_info processing for druggability revamp

Changes

• Removed old druggability input file (syn13363443.11) from gene_info files in config and test_config
• Removed old druggability input file (syn13363443.11) from gene_info provenance in config and test_config
• Updated gene_metadata version number from 13 to 14 in config and test_config
• Used new druggability source file (syn64123611.1) in config, call it pharos_classes
• Updated druggability custom transform to keep only the pharos_class object
• Updated gene_info druggability tests and testing assets
• Updated druggability gx validation

Acceptance Criteria

• ADT configs incorporate the appropriate source file/provenance updates
• transform_gene_info is updated as required to produce the target data structure
• custom transform tests are added/updated as required
• GX validation is adjusted as required

[BWMac]

@beatrizsaldana I think your CI is failing because of the schema update I did to the GX tables as part of #161. If you merge those changes into your branch it should work again.

[BWMac]

My main question which could have some implications for the shape of this PR is: Does the druggability field need to be nested anymore? If not, this can be simplified quite a bit.

[BWMac]

My main question which could have some implications for the shape of this PR is: Does the druggability field need to be nested anymore? If not, this can be simplified quite a bit.

[beatrizsaldana]

My main question which could have some implications for the shape of this PR is: Does the druggability field need to be nested anymore? If not, this can be simplified quite a bit.

@BWMac according to @JessterB the field does need to be nested.

[JessterB]

lgtm! (assuming CI passes ;)

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud

[BWMac]

🚀

[jaclynbeck-sage]

Looks great, assuming CI passes w/ Brad's update