Merge pull request #1260 from JessterB/AG-1293

AG-1293: Update local data scripts to import and index data into new …
Sage-Bionetworks · Nov 8, 2023 · 990bace · 990bace
2 parents 1a46380 + 58b49e0
commit 990bace
Show file tree

Hide file tree

Showing 2 changed files with 7 additions and 0 deletions.
diff --git a/scripts/mongo-create-Indexes.js b/scripts/mongo-create-Indexes.js
@@ -46,6 +46,12 @@ const collections = [
       { ensembl_gene_id: 1 }
     ]
   },
+  {
+    name: 'proteomicssrm',
+    indexes: [
+      { ensembl_gene_id: 1 }
+    ]
+  },
   {
     name: 'genesbiodomains',
     indexes: [

diff --git a/scripts/mongo-import.sh b/scripts/mongo-import.sh
@@ -20,6 +20,7 @@ mongoimport --db agora --collection genesoverallscores --jsonArray --drop --file
 mongoimport --db agora --collection rnaboxdistribution --jsonArray --drop --file ./rna_distribution_data.json
 mongoimport --db agora --collection proteomicsboxdistribution --jsonArray --drop --file ./proteomics_distribution_data.json
 mongoimport --db agora --collection proteomicstmt --jsonArray --drop --file ./proteomics_tmt.json
+mongoimport --db agora --collection proteomicssrm --jsonArray --drop --file ./proteomics_srm.json
 mongoimport --db agora --collection genesbiodomains --jsonArray --drop --file ./genes_biodomains.json
 mongoimport --db agora --collection biodomaininfo --jsonArray --drop --file ./biodomain_info.json