AG-1293: Update local data scripts to import and index data into new …

…proteomicssrm collection
Sage-Bionetworks · Nov 6, 2023 · 58b49e0 · 58b49e0
1 parent eda4649
commit 58b49e0
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diff --git a/scripts/mongo-create-Indexes.js b/scripts/mongo-create-Indexes.js
@@ -46,6 +46,12 @@ const collections = [
       { ensembl_gene_id: 1 }
     ]
   },
+  {
+    name: 'proteomicssrm',
+    indexes: [
+      { ensembl_gene_id: 1 }
+    ]
+  },
   {
     name: 'genesbiodomains',
     indexes: [

diff --git a/scripts/mongo-import.sh b/scripts/mongo-import.sh
@@ -20,6 +20,7 @@ mongoimport --db agora --collection genesoverallscores --jsonArray --drop --file
 mongoimport --db agora --collection rnaboxdistribution --jsonArray --drop --file ./rna_distribution_data.json
 mongoimport --db agora --collection proteomicsboxdistribution --jsonArray --drop --file ./proteomics_distribution_data.json
 mongoimport --db agora --collection proteomicstmt --jsonArray --drop --file ./proteomics_tmt.json
+mongoimport --db agora --collection proteomicssrm --jsonArray --drop --file ./proteomics_srm.json
 mongoimport --db agora --collection genesbiodomains --jsonArray --drop --file ./genes_biodomains.json
 mongoimport --db agora --collection biodomaininfo --jsonArray --drop --file ./biodomain_info.json