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Merge branch 'master' of github.com:ReproNim/containers
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* 'master' of github.com:ReproNim/containers:
  fix: remove ad-hoc option for mriqc absent in older versions (at least the script portion)
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yarikoptic committed Nov 19, 2024
2 parents 710bb0b + 1e9ac09 commit ae14dde
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Expand Up @@ -168,6 +168,9 @@ datalad install -d . -s ///repronim/containers code/containers
# would fail to run on CI.
datalad run -m "Downgrade/Freeze mriqc container version" \
code/containers/scripts/freeze_versions --save-dataset=. bids-mriqc=0.16.0
# That version of mriqc does not have an option --no-datalad-get we had to
# hardcode for mriqc to workaround an issue. So let's remove it
datalad run -m "Remove ad-hoc option for mriqc for older frozen version" sed -i -e 's, --no-datalad-get,,g' .datalad/config
# Install input data:
datalad install -d . -s https://github.com/ReproNim/ds000003-demo sourcedata
# Setup git to ignore workdir to be used by pipelines
Expand Down Expand Up @@ -244,6 +247,8 @@ datalad run -m "Downgrade/Freeze mriqc container version" \
code/containers/scripts/freeze_versions --save-dataset=. bids-mriqc=0.16.0
```
**Option 2: ///repronim/containers**
```bash
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