Skip to content

Commit

Permalink
fix: remove ad-hoc option for mriqc absent in older versions (at leas…
Browse files Browse the repository at this point in the history
…t the script portion)
  • Loading branch information
yarikoptic committed Nov 14, 2024
1 parent 9ff013d commit 1e9ac09
Showing 1 changed file with 5 additions and 0 deletions.
5 changes: 5 additions & 0 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -168,6 +168,9 @@ datalad install -d . -s ///repronim/containers code/containers
# would fail to run on CI.
datalad run -m "Downgrade/Freeze mriqc container version" \
code/containers/scripts/freeze_versions --save-dataset=. bids-mriqc=0.16.0
# That version of mriqc does not have an option --no-datalad-get we had to
# hardcode for mriqc to workaround an issue. So let's remove it
datalad run -m "Remove ad-hoc option for mriqc for older frozen version" sed -i -e 's, --no-datalad-get,,g' .datalad/config
# Install input data:
datalad install -d . -s https://github.com/ReproNim/ds000003-demo sourcedata
# Setup git to ignore workdir to be used by pipelines
Expand Down Expand Up @@ -244,6 +247,8 @@ datalad run -m "Downgrade/Freeze mriqc container version" \
code/containers/scripts/freeze_versions --save-dataset=. bids-mriqc=0.16.0
```
**Option 2: ///repronim/containers**
```bash
Expand Down

0 comments on commit 1e9ac09

Please sign in to comment.