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341 Open 181 Closed
341 Open 181 Closed
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Issues list

Adapter Detection Issue with Paired-End Data in fastp Leading to Incomplete Trimming
#583 opened Oct 31, 2024 by Liping-L
merging read pair mates using a reference sequence
#582 opened Oct 30, 2024 by mmokrejs
merge paired-end reads: include average or even better median overlap length
#581 opened Oct 30, 2024 by mmokrejs
Deduplication issue: failure of one round deduplication + accuracy level issue. [fastp v0.23.4]
#580 opened Oct 3, 2024 by nightkid03
Adapter sequences not removed from short SE data
#577 opened Sep 26, 2024 by MafGal
Fastp does not remove G homopolymers
#576 opened Sep 26, 2024 by Homap
Output read lengths are affected by duplicate --adapter_sequence arguments
#575 opened Sep 20, 2024 by mwhamgenomics
What are the default settings?
#574 opened Sep 12, 2024 by jiangzy26
Ability to use FASTA files as input
#573 opened Jul 31, 2024 by vkkodali
trimming adapters at the beginning of the read and IUPAC nucleotide codes
#572 opened Jul 24, 2024 by hrehrauer
Use with fifo?
#571 opened Jul 15, 2024 by GregTD42
3
How can I reproduce the results of trimmomatic in fastp?
#570 opened Jul 15, 2024 by jeong2624
2
Feature request: output file listing the IDs of duplicate reads and associated "representative reads"
#569 opened Jul 3, 2024 by charlesfoster
1
How can I generate images of the same size as the insert fragment individually
#568 opened Jun 25, 2024 by Missthepast
Feature request: remove reads with poly_X tails and polyX in general
#566 opened Jun 6, 2024 by roni-fultheim
ERROR: '+' expected
#565 opened Jun 5, 2024 by spw6422
5
Feature Request: fastp operation on input and output directories
#564 opened May 26, 2024 by SuhasSrinivasan
Running fastp in quiet mode.
#563 opened May 26, 2024 by otradnaya
2
Not reproducible
#562 opened May 13, 2024 by jnmaloof
7
not support arm?
#561 opened May 12, 2024 by YWYONE
1
Error is raised for problematic rows
#560 opened May 12, 2024 by TomerAntman
3
few options throw 'undefined error' -reg
#559 opened Apr 19, 2024 by parima678
fastp not removing all Illumina universal adapter sequences as indicated by FastQC
#558 opened Apr 15, 2024 by luckyvivi
5
No adapter detected for read and Q20 bases: 4747174600(99.9999%)
#557 opened Apr 8, 2024 by h20gg702
Nanopore data filtering using fastp
#555 opened Mar 26, 2024 by emilydolivo97
1
ProTip! Exclude everything labeled bug with -label:bug.