Remove run ROBOT mesure on full ontology

util/lib.py

@@ -342,41 +342,54 @@ def load_yaml(filepath):
     return data
 
 
-def robot_prepare_ontology(o_path, o_out_path, o_metrics_path, base_iris, make_base, robot_prefixes={}, robot_opts="-v"):
-    logging.info(f"Preparing {o_path} for dashboard.")
-
-    callstring = ['robot', 'merge', '-i', o_path]
-
+def robot_prepare_ontology(
+    o_path,
+    o_out_path,
+    o_metrics_path,
+    base_iris,
+    make_base,
+    robot_prefixes=None,
+    robot_opts="-v"
+):
+    """
+    Run ROBOT mesure on the base, but generate it first if not available
+    """
+    logging.info("Preparing %s for dashboard.", o_path)
+
+    callstring = ["robot", "merge", "-i", o_path]
+
     if robot_opts:
         callstring.append(f"{robot_opts}")
-
-    ### Measure stuff
-    callstring.extend(['measure'])
-    for prefix in robot_prefixes:
-        callstring.extend(['--prefix', f"{prefix}: {robot_prefixes[prefix]}"])
-    callstring.extend(['--metrics', 'extended-reasoner','-f','yaml','-o',o_metrics_path])
-
-    ## Extract base
+
+    if robot_prefixes is None:
+        robot_prefixes = {}
+
+    # Extract base if not available
     if make_base:
-        callstring.extend(['remove'])
+        callstring.extend(["remove"])
         for s in base_iris:
-            callstring.extend(['--base-iri',s])
-        callstring.extend(["--axioms", "external", "--trim", "false", "-p", "false"])
-
-    ### Measure stuff on base
-    callstring.extend(['measure'])
+            callstring.extend(["--base-iri", s])
+        callstring.extend(
+            ["--axioms", "external", "--trim", "false", "-p", "false"]
+        )
+
+    # Measure stuff
+    callstring.extend(["measure"])
     for prefix in robot_prefixes:
-        callstring.extend(['--prefix', f"{prefix}: {robot_prefixes[prefix]}"])
-    callstring.extend(['--metrics', 'extended-reasoner','-f','yaml','-o',f"{o_metrics_path}.base.yml"])
-
-    ## Output
-    callstring.extend(['merge', '--output', o_out_path])
+        callstring.extend(["--prefix", f"{prefix}: {robot_prefixes[prefix]}"])
+    callstring.extend(
+        ["--metrics", "extended-reasoner", "-f", "yaml", "-o", o_metrics_path]
+    )
+
+    # Output
+    callstring.extend(["merge", "--output", o_out_path])
     logging.info(callstring)
-    
+
     try:
         check_call(callstring)
     except Exception as e:
-        raise Exception(f"Preparing {o_path} for dashboard failed...", e)
+        logging.error("Preparing %s for dashboard failed: %s", o_path, str(e))
+
 
 def count_up(dictionary, value):
     if value not in dictionary: